View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5090_low_1 (Length: 593)

Name: NF5090_low_1
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5090_low_1
NF5090_low_1
[»] chr2 (21 HSPs)
chr2 (20-580)||(44614255-44614812)
chr2 (20-272)||(44623751-44624003)
chr2 (259-471)||(44623510-44623722)
chr2 (399-536)||(39601814-39601951)
chr2 (146-256)||(39458954-39459064)
chr2 (110-256)||(39137521-39137667)
chr2 (122-228)||(39473637-39473743)
chr2 (292-362)||(39422491-39422561)
chr2 (167-256)||(39152307-39152396)
chr2 (292-362)||(39136281-39136351)
chr2 (403-580)||(39160869-39161046)
chr2 (403-580)||(39208148-39208325)
chr2 (401-488)||(39214733-39214820)
chr2 (296-362)||(39458209-39458275)
chr2 (294-358)||(39129487-39129551)
chr2 (173-228)||(39415103-39415158)
chr2 (125-256)||(39487723-39487854)
chr2 (292-362)||(39151898-39151968)
chr2 (122-228)||(39422018-39422124)
chr2 (292-362)||(39488192-39488262)
chr2 (475-536)||(39199652-39199713)
[»] chr8 (4 HSPs)
chr8 (163-272)||(40347398-40347507)
chr8 (259-387)||(44951351-44951476)
chr8 (259-378)||(40347250-40347369)
chr8 (503-576)||(44951527-44951600)
[»] chr7 (2 HSPs)
chr7 (120-256)||(19807471-19807607)
chr7 (292-362)||(19806642-19806712)
[»] scaffold0250 (1 HSPs)
scaffold0250 (23-72)||(4326-4375)
[»] chr3 (1 HSPs)
chr3 (103-156)||(51574601-51574654)
[»] chr5 (1 HSPs)
chr5 (320-360)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Complemental strand, 44614812 - 44614255
Alignment:
Q  20 gctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgga 119  Q
    |||||||||||||||||||||||||||  ||| ||||||| ||||||||||||| |||| |||| |||| |||||| |||||| | |   |||||| |      
T  44614812 gctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttgtttcaaacatt---ttcactcgac 44614716  T
Q  120 ctttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 219  Q
    ||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614715 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 44614616  T
Q  220 ttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttc 319  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614615 ttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttc 44614516  T
Q  320 tcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcg 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  44614515 tcaatatctctctttatagaccgcaattgcctctcttctactttttgtccattgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcg 44614416  T
Q  420 aggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatatttgtcacgatcatcatatagtgatacctt 519  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44614415 aggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacgaaggaatatcatcttcatctttgtcacgatcatcatatagtgatacctt 44614316  T
Q  520 tgatctcttaacagaaaagtccatggaattgttgctatcaaataacctcttaactggcagt 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614315 tgatctcttaacagaaaagtccatggaattgttgctatcaaataacctcttaactggcagt 44614255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 44624003 - 44623751
Alignment:
Q  20 gctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgga 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44624003 gctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaa 44623904  T
Q  120 ctttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||| | | ||    
T  44623903 ctttaaattcctcttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttt 44623804  T
Q  220 ttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaa 272  Q
    |||||||||||||||| |||  |||||||| ||||||||||||| ||| ||||    
T  44623803 ttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa 44623751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 259 - 471
Target Start/End: Complemental strand, 44623722 - 44623510
Alignment:
Q  259 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 358  Q
    |||||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44623722 cttttcagtctcaaattccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttct 44623623  T
Q  359 actttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttat 458  Q
    |||| |||||| ||||||||| | |||||       ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  44623622 acttgttgtccgttgcattccgcgaatgatttttttaacgatgcaagttctttcctcagcatggaaaatgaattatcagctgattttcctggctttttat 44623523  T
Q  459 ttatattcaacga 471  Q
    |||| ||||||||    
T  44623522 ttatgttcaacga 44623510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 399 - 536
Target Start/End: Complemental strand, 39601951 - 39601814
Alignment:
Q  399 atgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatatttgtcacg 498  Q
    |||||||  ||||| ||||||||||||||||  |||||| |||||||| |||||||||| ||| || |||| ||||||||||||||||||  |||||  |    
T  39601951 atgcaaggcctttcttcagcgaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatcattgtcgtg 39601852  T
Q  499 atcatcatatagtgatacctttgatctcttaacagaaa 536  Q
    ||||| ||||||||| ||||||||| ||||||||||||    
T  39601851 atcatgatatagtgacacctttgatttcttaacagaaa 39601814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 39459064 - 39458954
Alignment:
Q  146 aactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggc 245  Q
    |||||| |||||  || |||||||| ||||||||||||||| |  |||||  | | ||||||||||||||||||||||||||| || ||||||||| |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  246 cttcaaattca 256  Q
    |||||||||||    
T  39458964 cttcaaattca 39458954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 39137667 - 39137521
Alignment:
Q  110 ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcga 209  Q
    ||||| || ||||| ||||||||||||||||| ||||||||| ||| |  |  |||| ||| |||||||| || |||||  | ||| ||||||||||| |    
T  39137667 ttcacgtgtactttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctgcttctgtcggctctcaa 39137568  T
Q  210 aatgcttcttttctgattcaaagtccttcaccaggccttcaaattca 256  Q
    ||||||||||||| ||||| |  |||||||||  |||||||||||||    
T  39137567 aatgcttcttttcagattcgagttccttcaccctgccttcaaattca 39137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  122 ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 221  Q
    ||||||||||| |||||||| ||||||||| |||||  ||  | ||||| ||||||||||||||| |  |||||  || |||||||||||||||||||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  222 ctgattc 228  Q
    |||||||    
T  39473737 ctgattc 39473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 39422491 - 39422561
Alignment:
Q  292 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 362  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||  | ||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 39152396 - 39152307
Alignment:
Q  167 aattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattca 256  Q
    |||||||||||  ||||||| |  |||||  ||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  39152396 aattccttttccattgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttcaaattca 39152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 39136351 - 39136281
Alignment:
Q  292 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 362  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  39136351 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 580
Target Start/End: Complemental strand, 39161046 - 39160869
Alignment:
Q  403 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatatttgtcacgatca 502  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| ||||| || || |   ||  |||||| ||||| ||| |||  |  |||||    
T  39161046 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggctttttagttgtacttgtcggcggaataccatctccatcttttccctgatca 39160947  T
Q  503 tcatatagtgatacctttgatctcttaacagaaaagtccatggaattgttgctatcaaataacctcttaactggcagt 580  Q
    |||||  | ||  |||||||| ||||||||||||  |||| ||||||| || | ||||| | ||||||||||||||||    
T  39160946 tcatacggcgacgcctttgatttcttaacagaaacatccaaggaattgctgttctcaaacagcctcttaactggcagt 39160869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 580
Target Start/End: Original strand, 39208148 - 39208325
Alignment:
Q  403 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcatatttgtcacgatca 502  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| ||||| || || |   ||  |||||| ||||| ||| |||  |  |||||    
T  39208148 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggctttttagttgtacttgtcggcggaataccatctccatcttttccctgatca 39208247  T
Q  503 tcatatagtgatacctttgatctcttaacagaaaagtccatggaattgttgctatcaaataacctcttaactggcagt 580  Q
    |||||  | ||  |||||||| ||||||||||||  |||| ||||||| || | ||||| | ||||||||||||||||    
T  39208248 tcatacggcgacgcctttgatttcttaacagaaacatccaaggaattgctgttctcaaacagcctcttaactggcagt 39208325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 488
Target Start/End: Complemental strand, 39214820 - 39214733
Alignment:
Q  401 gcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcat 488  Q
    ||||| |||||| ||||||||||||||||  |||  | ||||||||||||||||||| ||| || | || || |||||||||||||||    
T  39214820 gcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcat 39214733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 39458275 - 39458209
Alignment:
Q  296 ttttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 362  Q
    ||||| || ||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 39129551 - 39129487
Alignment:
Q  294 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 358  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||| | ||||||||    
T  39129551 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 39415103 - 39415158
Alignment:
Q  173 ttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattc 228  Q
    ||||||||||||||||  |||||  || |||| |||||||||||||||||||||||    
T  39415103 ttttcttttgattcaagctccttcagttggctttcgaaatgcttcttttctgattc 39415158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 39487723 - 39487854
Alignment:
Q  125 aattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctg 224  Q
    |||||||| |||||||| ||||||||| ||| |  |  ||||  || |||||||| || ||| |  ||||| |||||||||||  ||||||||||||| |    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtgcttcgagctccttctgtcggctctcagaatgcttcttttcag 39487822  T
Q  225 attcaaagtccttcaccaggccttcaaattca 256  Q
    ||||    ||||||||| ||||||||||||||    
T  39487823 attcgggctccttcacccggccttcaaattca 39487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 39151968 - 39151898
Alignment:
Q  292 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 362  Q
    ||||||||| ||||||||| ||| || |||||||| ||||||||| ||| ||| || | ||||||||||||    
T  39151968 cttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctactt 39151898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 39422018 - 39422124
Alignment:
Q  122 ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 221  Q
    ||||||||||| ||||||||  |||||||| ||| |  ||  || |||| ||||||| ||||||| |  |||||  ||||||| || |||||||||||||    
T  39422018 ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttctttt 39422117  T
Q  222 ctgattc 228  Q
    |||||||    
T  39422118 ctgattc 39422124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 39488192 - 39488262
Alignment:
Q  292 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 362  Q
    ||||||||| ||||||||  |||| | ||||| |||||||||||||||| ||| || || |||||||||||    
T  39488192 cttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 536
Target Start/End: Original strand, 39199652 - 39199713
Alignment:
Q  475 aatatcatcttcatatttgtcacgatcatcatatagtgatacctttgatctcttaacagaaa 536  Q
    ||||| |||| ||| ||||||| |||||| |||| |||| ||||||||| ||||||||||||    
T  39199652 aatattatctccatctttgtcatgatcatgatatggtgacacctttgatttcttaacagaaa 39199713  T

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Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 40347507 - 40347398
Alignment:
Q  163 ttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttt 262  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |   |||||||||||||||||||||| ||| | ||||||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  263 tcagactcaa 272  Q
    | ||| ||||    
T  40347407 ttagattcaa 40347398  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 259 - 387
Target Start/End: Original strand, 44951351 - 44951476
Alignment:
Q  259 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 358  Q
    ||||| |||||||||||| ||||| | ||||||||||||||| ||||||| |||||| |||| ||||||||||||||| | ||||||| |||||||||||    
T  44951351 ctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcacttcttaatatctctctttatcggccgcaattgcctctcttct 44951450  T
Q  359 actttttgtccattgcattcctcaaatga 387  Q
    ||   ||| || |||||||||||||||||    
T  44951451 ac---ttgcccgttgcattcctcaaatga 44951476  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 259 - 378
Target Start/End: Complemental strand, 40347369 - 40347250
Alignment:
Q  259 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 358  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| || ||||||| | || |||| || ||||||||||||||| ||| |    
T  40347369 cttttcagattcaagtttcttaacttgggtctccatattttctagctctttgcaacacttctcaacagctttcttaatggaccgcaatcgcctcactttt 40347270  T
Q  359 actttttgtccattgcattc 378  Q
    |||| ||||| |||||||||    
T  40347269 acttgttgtctattgcattc 40347250  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 44951527 - 44951600
Alignment:
Q  503 tcatatagtgatacctttgatctcttaacagaaaagtccatggaattgttgctatcaaataacctcttaactgg 576  Q
    |||||| |||| | ||||||| |||||||||||| |  || ||||||| || ||||||||| ||||||||||||    
T  44951527 tcatatggtgacatctttgatttcttaacagaaatgatcaaggaattgctgttatcaaatagcctcttaactgg 44951600  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 19807607 - 19807471
Alignment:
Q  120 ctttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 219  Q
    |||| ||||||||||||||||| ||||||||| ||| |  |  |||| ||| |||||||| || ||| |    ||| |||||||||||||||||||||||    
T  19807607 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagccgcttctgtcggctctcgaaatgcttctt 19807508  T
Q  220 ttctgattcaaagtccttcaccaggccttcaaattca 256  Q
    ||| ||||| |  |||||| || ||||||||||||||    
T  19807507 ttcagattcgagctccttcgcccggccttcaaattca 19807471  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 19806712 - 19806642
Alignment:
Q  292 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 362  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  19806712 cttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
Q  23 ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt 72  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  4375 ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt 4326  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
Q  103 aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac 156  Q
    |||||| ||||||||||||||||| ||||| ||||||||||  |||||| ||||    
T  51574654 aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac 51574601  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 17058883 - 17058843
Alignment:
Q  320 tcaatatctctctttatagaccgcaatcgcctctcttctac 360  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  17058883 tcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

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