View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090_low_10 (Length: 250)
Name: NF5090_low_10
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 31214084 - 31213874
Alignment:
| Q |
33 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaa-----ggagtgttctatttagttaca |
127 |
Q |
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| T |
31214084 |
aacacaccatgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaattaaaggagtgttctatttagttaca |
31213985 |
T |
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| Q |
128 |
taaacttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggtttcaaccccaca |
227 |
Q |
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| T |
31213984 |
taaa-ttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggtttcaaccccaca |
31213886 |
T |
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| Q |
228 |
agactgagagag |
239 |
Q |
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|||| ||||||| |
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| T |
31213885 |
agacagagagag |
31213874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 31201545 - 31201329
Alignment:
| Q |
33 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
132 |
Q |
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|||||||| |||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31201545 |
aacacaccatgataatgagatcttggttttttt--gtagtaatatagttcttccaaatattgtttttcagcaaaggagtgttctatttagttacatgaac |
31201448 |
T |
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| Q |
133 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
221 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
31201447 |
ttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgaggacatgagaagaaggggctacaac |
31201348 |
T |
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| Q |
222 |
cccacaagactgagagaga |
240 |
Q |
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| T |
31201347 |
cccacaagaatcagagaga |
31201329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 13605671 - 13605464
Alignment:
| Q |
33 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
132 |
Q |
| |
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|||||||| |||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
13605671 |
aacacaccatgataatgagatctcgattttttatagta---atatcgttcctccaaatattgtttttcagcaaaggagcgttctatttaattacatgaac |
13605575 |
T |
|
| Q |
133 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
221 |
Q |
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|||||||||||||| || |||||||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||||||| ||||||| |
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| T |
13605574 |
ttattataatttttgaataatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgagaacatgagaagaagggctttcaac |
13605475 |
T |
|
| Q |
222 |
cccacaagact |
232 |
Q |
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||||||||||| |
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| T |
13605474 |
cccacaagact |
13605464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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