View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090_low_2 (Length: 550)
Name: NF5090_low_2
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 37938975 - 37939513
Alignment:
| Q |
1 |
gccattagatccttcagttttgtcagttgcttgctcgggctccacttccttaataatttctccaacttcctcacctacttgtaattgttcacttagcttt |
100 |
Q |
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| T |
37938975 |
gccattagatccttcagttttttcagttgcttgctcgggctccacttccttaataatttccccaacttcctcacctacttgtaattgttcacttagcttt |
37939074 |
T |
|
| Q |
101 |
tcctccactccattagacagaggatcaatgttctcttcttttacaagaattgcttctgacccagagttgttggtctctttcaccgcctcaatatccgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939075 |
tcctccactccattagacagaggatcaatgttctcttcttttacaagaattgcttctgacccagagttgttggtctctttcaccgcctcaatatccgagt |
37939174 |
T |
|
| Q |
201 |
cttttggagggtgaacctccactctatcacctgtttgttcttgattttcagtttcttcctttggtttcctttcttcctcttgtttgactgattgaattcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
37939175 |
cttttggagggtgaacctccactctatcacctgtttgttcttgattttcagtttcttcctttggtttcacttcttcctcttgtttgaatgattgaattcc |
37939274 |
T |
|
| Q |
301 |
tgtttcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgct |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939275 |
tggttcactttggttttcatccacttcagtaaccacaggctctactttctctgtttcagctggccctgcttcgtcgttcttagtctctttcagtatcgct |
37939374 |
T |
|
| Q |
401 |
gcctcaaattctaattctcttgacttttcttctacagcaatgaaatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctctt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37939375 |
gcctcaaattctaattctcttgacttttcttctacagcaatgacatcattggtttctgtagactgttctggaattgaagatgcgtttggttgctcctctt |
37939474 |
T |
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| Q |
501 |
cccttcgttccgttgaatgttgttctggttctttctgat |
539 |
Q |
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| T |
37939475 |
cccttcgttccgttgaatgttgttctggttctttctgat |
37939513 |
T |
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