View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090_low_3 (Length: 386)
Name: NF5090_low_3
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38418514 - 38418827
Alignment:
| Q |
1 |
tgaggttctcaaatgagttttcactcaaaagaaaaagaatcggagattgggttaattatgatacaataaatagcataggtatacataacataacatgatc |
100 |
Q |
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| T |
38418514 |
tgaggttctcaaatgagttttcactcaaaagaaaaagaatcggagattgggttaattatgatacaataaatagcataggtatacataacat-----gatc |
38418608 |
T |
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| Q |
101 |
ctatttgcaatttattgatttaattgagcnnnnnnn-caacatcaaaacatagaacatcatatgataccagtgtatgtaggtcattccggtcttatccaa |
199 |
Q |
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| T |
38418609 |
ctatttgcaatttattgatttaattgagcaaagaaaacaacatcaaaacatagaacatcatatgataccagtgtatgtaggtcattccggtcttatccaa |
38418708 |
T |
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| Q |
200 |
cacaaat-aaaagatgaccctaaatccaaaatctcaaagaccaatctaaacataataaaggaggcacatcaaatatcccacaaaggatgtgaaatgagaa |
298 |
Q |
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| T |
38418709 |
cacaaataaaaagatcaccctaaatccaaaatctcaaagaccaatctaaacataataaaggaggcacatcaaatatcccac-aaggatgtgaaatgagaa |
38418807 |
T |
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| Q |
299 |
taattagaacaacacattgt |
318 |
Q |
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| T |
38418808 |
taattagaaaaacacattgt |
38418827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 38418849 - 38418885
Alignment:
| Q |
340 |
tgaaacctataatgtgattaataaattaaccagtatt |
376 |
Q |
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| T |
38418849 |
tgaaacctataatgtgattaataaattaaccagtatt |
38418885 |
T |
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