View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090_low_7 (Length: 291)
Name: NF5090_low_7
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 44550999 - 44551264
Alignment:
| Q |
15 |
cattacccaccaatcatttcttgagattaattaattaagccatatagaggtatatggggagaattggaggcaacaagcattatgcttatataccagtata |
114 |
Q |
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| T |
44550999 |
cattacccaccaatcatttcttgagattaattaattaagccatatagaggtatatggggagaattggaggcaacaagcattatgcttatataccagtata |
44551098 |
T |
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| Q |
115 |
agaaaacttatagtgctattctatattgtcgtaaataatttacagttaggaagtgaaatgattttgtgctaaatatacattcttttagcacaaatccaac |
214 |
Q |
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| T |
44551099 |
agaaaacttataatgctattctatatagtcgtaaataatttacagttaagaagtgaaatgattttgtgctaaatatacattcttttagcacaaatccaac |
44551198 |
T |
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| Q |
215 |
atacaagtcaagaaatttcaacatnnnnnnnncaaatagaactaaagaatatatgagaggagaatt |
280 |
Q |
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| T |
44551199 |
atacaagtcaagaaatttcaacataaaaaaaacaaatagaactaaagaatatatgagaggagaatt |
44551264 |
T |
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