View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090_low_8 (Length: 266)
Name: NF5090_low_8
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 10784024 - 10783782
Alignment:
| Q |
18 |
ctaactccacgggtcgtataacacgatcgaagagtaattcatcccagaagttcaactctttgagtgtaggttctacctctagagagagggaagataagga |
117 |
Q |
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| T |
10784024 |
ctaactccacgggtcgtataacacgatctaagagtaattcatcccagaagttcaactctttgagtgtaggttcttcttctagagagagggaagataagga |
10783925 |
T |
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| Q |
118 |
agacggtccatcccataagatcaactgtgttgatggattagttgataagaatccttcttgtttggtgtctactagactcacaactgttaaccctaaggtt |
217 |
Q |
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| T |
10783924 |
agacggtccatctcataagatcaactatgttgatggattagttgataagaatccttcttgtttggtgtctactagactcacaactgttaaccctaacgtt |
10783825 |
T |
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| Q |
218 |
cggaagattcctgattttactaagcaacttgggtttgatgatg |
260 |
Q |
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| T |
10783824 |
cggaagaatcctgattttactaagcaacttggttttgatgatg |
10783782 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 50507527 - 50507625
Alignment:
| Q |
162 |
ataagaatccttcttgtttggtgtctactagactcacaactgttaaccctaaggttcggaagattcctgattttactaagcaacttgggtttgatgatg |
260 |
Q |
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| T |
50507527 |
ataaggatccttcttgtttggtgtctactagactcataactgttaaccctaaggttcagaagaatcctgatttcactaagcaacttggttttgatgatg |
50507625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 50507434 - 50507527
Alignment:
| Q |
18 |
ctaactccacgggtcgtataacacgatcgaagagtaattcatcccagaagttcaactctttgagtgtaggttctacctctagagagagggaagataa |
114 |
Q |
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| T |
50507434 |
ctaactccacgggtcgtataacacgatctaagagt---tcaacccagaagttcaactctttcagtgtaggttcttcttctagagagagggaagataa |
50507527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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