View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5090_low_9 (Length: 255)
Name: NF5090_low_9
Description: NF5090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5090_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31213630 - 31213387
Alignment:
| Q |
1 |
agtaggcataactgaaatatgtttatactaagggatggagggagtacttgttttgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctc |
100 |
Q |
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| T |
31213630 |
agtaggcataactgaaatatgtttatactaagg-acggagggagtacttgttttgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctc |
31213532 |
T |
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| Q |
101 |
caaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaatctggggggatgcacagcataaccttccaatttaataattctctgg |
200 |
Q |
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| T |
31213531 |
caaatcctccttaaatatccatcgataacctcaatttttgacctctaaatgcaatctggggggatgcacagcataaccttccaatttaataattctctgg |
31213432 |
T |
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| Q |
201 |
ggaaagcacccacgttg----cttgtgatatactccataaatgat |
241 |
Q |
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| T |
31213431 |
ggaaagcacccacgttgtccacttgtgatatactccataaatgat |
31213387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 31248002 - 31247902
Alignment:
| Q |
54 |
tgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgca |
153 |
Q |
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| T |
31248002 |
tgaactgaggaatttccactgtacatcatttgtgggtttaaatgttccagatcctccttaaatatccaatgataaccacaattttttacctccaaatgca |
31247903 |
T |
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| Q |
154 |
a |
154 |
Q |
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| T |
31247902 |
a |
31247902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 31264087 - 31264164
Alignment:
| Q |
77 |
catcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaa |
154 |
Q |
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| T |
31264087 |
catcatttgcgcgtttaaatgttccagatcctccttaaatatccaatgataaccacaatttttgacctccaaatgcaa |
31264164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 31304872 - 31304800
Alignment:
| Q |
82 |
tttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaa |
154 |
Q |
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| T |
31304872 |
tttgtgggtttaattgctccagatcctcctcaaatatccatctgtaaccacagttctttacctcaaaatgcaa |
31304800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 13615741 - 13615656
Alignment:
| Q |
49 |
tgttttgaaccgaggaatttccaccgtacatcattt--gtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaa |
134 |
Q |
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| T |
13615741 |
tgttttgaactgaggaatttccaac-ta-atcatttgcgggggtttaattgctccaaatcctcctcaaatatccaacgataaccacaa |
13615656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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