View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5091_high_3 (Length: 354)
Name: NF5091_high_3
Description: NF5091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5091_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 56043511 - 56043172
Alignment:
| Q |
1 |
ccaccttgagaaacaccacagttagcaaaaatagtgataataacatgctccttcatattaaacggaccaggattcaacgtgaaacgccaccgcccaaaaa |
100 |
Q |
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| T |
56043511 |
ccaccttgagaaacaccacagttagcaaaaatagtgataataacatgctccttcatattaaacggaccaggattcaacgtgaaacgccaccgcccaaaaa |
56043412 |
T |
|
| Q |
101 |
agttatactctttggtgggaagagtggcggccatgaactttccgatgggaagaacagcgatttgcatgagaatagcagagatagttagtggttgagttct |
200 |
Q |
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| T |
56043411 |
agttatactctttggtgggaagagtggcggccatgaactttccgatgggaagaacagcgatttgcatgagaatagcagagatagttagtggttgagttct |
56043312 |
T |
|
| Q |
201 |
gaaagtgaagaaagtgttgagaaagatgagtatgatgcaagaagtaattccaaggaaccatgaacggaaagtcatgactggaagagaagggtcgtcggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56043311 |
gaaagtgaagaaagtgttgagaaagatgagtatgatgcaagaagtaattccaaggaaccatgaacggaaagtcatgactggaagagaagggtcgtcggtt |
56043212 |
T |
|
| Q |
301 |
tcagggacgacgagagctacttcttcaattggacatctgt |
340 |
Q |
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| T |
56043211 |
tcagggacgacgagagctacttcttcaattggacatctgt |
56043172 |
T |
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