View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5091_high_4 (Length: 336)
Name: NF5091_high_4
Description: NF5091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5091_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 31598346 - 31598481
Alignment:
| Q |
72 |
aagatgaagttcaaattaattttcattattattctacaaagaagaaaattactatcaattattcaacaaccagaacctctagttgcataattacagttgt |
171 |
Q |
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| T |
31598346 |
aagatgaagttcaagttaattttcattattattctacaaagaagaaaattactatcaattattcaacaaccagaacctctagttgcataattacagttat |
31598445 |
T |
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| Q |
172 |
caagaccatggtgaattcttgtcaaaatttatattt |
207 |
Q |
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| T |
31598446 |
caagaccatggtgaattcttgtcaaaatttatattt |
31598481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 31598522 - 31598599
Alignment:
| Q |
197 |
aatttatatttcaacgtgaagtatttgttgcatgccaatccttttagggcttctattcttatgatcttgatcactgac |
274 |
Q |
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| T |
31598522 |
aattcatatttcaacgtgaagtatttattgcatgccaatccttttagggcttctattctcatgatcttgatcactgac |
31598599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 31602319 - 31602258
Alignment:
| Q |
213 |
tgaagtatttgttgcatgccaatccttttagggcttctattcttatgatcttgatcactgac |
274 |
Q |
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| T |
31602319 |
tgaagtatttgttgcatgccaatccttttaggacttctattttcatcatcatgatcaatgac |
31602258 |
T |
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