View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5091_high_6 (Length: 332)
Name: NF5091_high_6
Description: NF5091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5091_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 51502238 - 51501935
Alignment:
| Q |
1 |
actaacttattcttggaccaaggatataaaagtagagtgaaaatcaactacagtttaaacaatagagtgaaaatcaagaaaaaataactgattcaaggtg |
100 |
Q |
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| T |
51502238 |
actaactcattcttggaccaaggatataaaagtagagtgaaaatcaactacagtttgaacagtagagtgacaatcaagaaaaaataactgattcaaggtg |
51502139 |
T |
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| Q |
101 |
agatatcgcactgaaaacagaggattatcaaagattcatgcacacctggagttgacaattcacaattatttaataaaatgaagagactaggttgtcacat |
200 |
Q |
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| T |
51502138 |
agacatcacacagaaaacagaggattatcaaagattcatgcacacctggagttgataattcacaattatttaataaaatgaagagactaggttgtcacat |
51502039 |
T |
|
| Q |
201 |
gattacattttcaagtggtatatccacaaactaatttttactggtaaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaattc |
300 |
Q |
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| T |
51502038 |
gattacattttcaagtggtatatccacaaactaatttttactggtaaatttattaatgtggctaattttcgttgtttgttcagtaaattacacacaattc |
51501939 |
T |
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| Q |
301 |
ttca |
304 |
Q |
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|||| |
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| T |
51501938 |
ttca |
51501935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 51497187 - 51497040
Alignment:
| Q |
40 |
aaaatcaactacagtttaaacaatagagtgaaaatcaagaaaaaataactgattcaaggtgagatatcgcactgaaaacagaggattatcaaagattcat |
139 |
Q |
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| T |
51497187 |
aaaatcaactacagtttgaacagtagagtgaaaatcaagaaaaaataactgattcaaggtgagacatcgcactgaaaacagaggattatcaaagattcat |
51497088 |
T |
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| Q |
140 |
gcacacctggagttgacaattcacaattatttaataaaatgaagagac |
187 |
Q |
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| T |
51497087 |
gcacacctggagttgacaattcacaattatttaataaaataaagagac |
51497040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 24750494 - 24750557
Alignment:
| Q |
239 |
tactggtaaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaattctt |
302 |
Q |
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| T |
24750494 |
tacttgtacatttattgatgtggctaattttcattgtttgatgagtaaattacccacaattctt |
24750557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 24765512 - 24765551
Alignment:
| Q |
248 |
atttattaatgtggctaattttcgttgtttgttgagtaaa |
287 |
Q |
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| T |
24765512 |
atttattaatgtggctaattttcatagtttgttgagtaaa |
24765551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 34387313 - 34387260
Alignment:
| Q |
246 |
aaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaatt |
299 |
Q |
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|||||||| ||||||||||||||| ||| |||||| |||||||||||||||| |
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| T |
34387313 |
aaatttatccatgtggctaattttcattgcttgttggataaattacacacaatt |
34387260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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