View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5092-Insertion-10 (Length: 626)

Name: NF5092-Insertion-10
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5092-Insertion-10
NF5092-Insertion-10
[»] chr4 (10 HSPs)
chr4 (8-618)||(35656260-35656870)
chr4 (11-296)||(35649902-35650187)
chr4 (11-296)||(35677982-35678267)
chr4 (17-293)||(35642328-35642604)
chr4 (505-624)||(35646829-35646948)
chr4 (364-404)||(20743906-20743946)
chr4 (518-612)||(35649248-35649342)
chr4 (518-612)||(35677328-35677422)
chr4 (356-402)||(51125861-51125907)
chr4 (360-404)||(18966013-18966057)
[»] scaffold1750 (1 HSPs)
scaffold1750 (11-298)||(886-1173)
[»] chr1 (1 HSPs)
chr1 (356-404)||(15867623-15867671)
[»] chr5 (1 HSPs)
chr5 (351-404)||(14004332-14004385)
[»] chr8 (1 HSPs)
chr8 (356-404)||(24887743-24887791)
[»] chr2 (1 HSPs)
chr2 (356-404)||(33657411-33657459)


Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Complemental strand, 35656870 - 35656260
Alignment:
Q  8 acttgtgtaccagctgcaatgtcatagccatttattttgatatcttccattgattttcgagggactaacaacggaactggtgcatggaggcgaagagttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35656870 acttgtgtaccagctgcaatgtcatagccatttattttgatatcttccattgattttcgagggactaacaacggaactggtgcatggaggcgaagagttt 35656771  T
Q  108 ctttgatcacagctttcaagtagttcatgttaaccaaatcctcctcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35656770 ctttgatcacagctttcaagtagttcatgttaaccaaatcctcctcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatg 35656671  T
Q  208 catcacagtttggtgtcttaatagttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctacatgcggggaaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35656670 catcacagtttggtgtcttaatagttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctacatgcggggaaaa 35656571  T
Q  308 cgcacaatttaattgactgacttaaattatgcattgtattaagtgtcgatcaatcataatcgtcacatcattaaaaatatttgacattaatcataaccag 407  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35656570 cgcacaatttaattgactgacttaaattctgcattgtattaagtgtcgatcaatcataatcgtcacatcattaaaaatatttgacattaatcataaccag 35656471  T
Q  408 ttttgtttctgaaaagatccttactacttctaaaatatactattaattgtaatttgataatctatcaaaatttaattctaaaatcatttactaaatgaat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35656470 ttttgtttctgaaaagatccttactacttctaaaatatactattaattgtaatttgataatctatcaaaatttaattctaaaatcatttactaaatgaat 35656371  T
Q  508 gatattattacttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccacaaaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35656370 gatattattacttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccacaaaa 35656271  T
Q  608 tcactctgctc 618  Q
    |||||||||||    
T  35656270 tcactctgctc 35656260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 35650187 - 35649902
Alignment:
Q  11 tgtgtaccagctgcaatgtcatagccatttattttgatatcttccattgattttcgagggactaacaacggaactggtgcatggaggcgaagagtttctt 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35650187 tgtgtaccagctgcaatgtcatagccatttagtttgatatcttccattgattttcgagggactaataacggaactggtgcatggaggcgaagagtttctt 35650088  T
Q  111 tgatcacagctttcaagtagttcatgttaaccaaatcctcctcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatgcat 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||||||||||    
T  35650087 tgatcacagctttcaagtagttcatgctaaccaaatcctcctcagttacatgagttctgttaccaaccacagttctcacctcatcttgcaatttatgcat 35649988  T
Q  211 cacagtttggtgtcttaatagttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctaca 296  Q
    ||| |||||||||||||||||||||||||| | ||||||||| |||||||| || || || |||||||||  ||||||||||||||    
T  35649987 cactgtttggtgtcttaatagttctgtcattgtccattctaggactgtgtaagtagtatcagtacctgcaataaacatgtcctaca 35649902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 35678267 - 35677982
Alignment:
Q  11 tgtgtaccagctgcaatgtcatagccatttattttgatatcttccattgattttcgagggactaacaacggaactggtgcatggaggcgaagagtttctt 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35678267 tgtgtaccagctgcaatgtcatagccatttagtttgatatcttccattgattttcgagggactaataacggaactggtgcatggaggcgaagagtttctt 35678168  T
Q  111 tgatcacagctttcaagtagttcatgttaaccaaatcctcctcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatgcat 210  Q
    |||||||||||||||||||||||||  |||||||||| || ||||||||||||||| |||||||||||||| | |||| |||||||||||||||||||||    
T  35678167 tgatcacagctttcaagtagttcataataaccaaatcatcatcagttacatgagttatgttaccaaccacagttctcacctcatcttgcaatttatgcat 35678068  T
Q  211 cacagtttggtgtcttaatagttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctaca 296  Q
    ||| |||||||||||||||||||||||||| | ||||||||| |||||||| || || || |||||||||  ||||||||||||||    
T  35678067 cactgtttggtgtcttaatagttctgtcattgtccattctaggactgtgtaagtagtatcagtacctgcaataaacatgtcctaca 35677982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 35642604 - 35642328
Alignment:
Q  17 ccagctgcaatgtcatagccatttattttgatatcttccattgattttcgagggactaacaacggaactggtgcatggaggcgaagagtttctttgatca 116  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||  ||  |||| ||||||||||||||||| ||||    
T  35642604 ccagcttcaatgtcatagccgtttagtttgatatcttccattgattttcgagggactaataaaggaaaaggaacatgaaggcgaagagtttctttaatca 35642505  T
Q  117 cagctttcaagtagttcatgttaaccaaatcctcctcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatgcatcacagt 216  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||||||| | ||||| |||||| | |||| |||||||||||||||||||||||| ||    
T  35642504 cagccttcaagtagttcatgttaaccaaatccttttcagttacatgagttctattacctaccacagttctcacctcatcttgcaatttatgcatcactgt 35642405  T
Q  217 ttggtgtcttaatagttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcct 293  Q
    |||||||||||| ||||||||||| ||||||||||  ||||||||||| || || ||||||||||||||||||||||    
T  35642404 ttggtgtcttaacagttctgtcattgcccattctaagactgtgtaggtagtatcagtacctgcagcaaacatgtcct 35642328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 505 - 624
Target Start/End: Complemental strand, 35646948 - 35646829
Alignment:
Q  505 aatgatattattacttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccaca 604  Q
    |||| |||| |||| ||| ||||||||||||||||||| | || ||||||| |  ||||| ||||||| |||||||||||  ||||| ||||||||||||    
T  35646948 aatggtattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccaca 35646849  T
Q  605 aaatcactctgctcttcatt 624  Q
    |||||| | ||||| |||||    
T  35646848 aaatcattatgctcctcatt 35646829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 20743946 - 20743906
Alignment:
Q  364 taatcgtcacatcattaaaaatatttgacattaatcataac 404  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  20743946 taatcgtcacatcattaaaaatatttgattttaatcataac 20743906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 612
Target Start/End: Complemental strand, 35649342 - 35649248
Alignment:
Q  518 cttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccacaaaatcact 612  Q
    ||||| |||| |||| |||| |||| | |||||||||||| |||||   || ||||  |||||||||  ||||||||||| ||||||||||||||    
T  35649342 cttaccagtaacaaacccttaattgcagttctatcaattgagaagctagtatcattgctcttttgaactgaaagcaaaacgtccacaaaatcact 35649248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 612
Target Start/End: Complemental strand, 35677422 - 35677328
Alignment:
Q  518 cttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccacaaaatcact 612  Q
    ||||| |||| |||| |||| |||| | |||||||||||| |||||   || ||||  |||||||||  ||||||||||| ||||||||||||||    
T  35677422 cttaccagtaacaaacccttaattgcagttctatcaattgagaagctagtatcattgctcttttgaactgaaagcaaaacgtccacaaaatcact 35677328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 51125861 - 51125907
Alignment:
Q  356 atcaatcataatcgtcacatcattaaaaatatttgacattaatcata 402  Q
    |||||||||||||| || ||||||| ||||||||||| |||||||||    
T  51125861 atcaatcataatcgccaaatcattagaaatatttgactttaatcata 51125907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 18966057 - 18966013
Alignment:
Q  360 atcataatcgtcacatcattaaaaatatttgacattaatcataac 404  Q
    ||||||||||||| |||||||||||| |||||| |||||| ||||    
T  18966057 atcataatcgtcatatcattaaaaatgtttgactttaatcgtaac 18966013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 1173 - 886
Alignment:
Q  11 tgtgtaccagctgcaatgtcatagccatttattttgatatcttccattgattttcgagggactaacaacggaactggtgcatggaggcgaagagtttctt 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1173 tgtgtaccagctgcaatgtcatagccatttagtttgatatcttccattgattttcgagggactaataacggaactggtgcatggaggcgaagagtttctt 1074  T
Q  111 tgatcacagctttcaagtagttcatgttaaccaaatcctcctcagttacatgagttttgttaccaaccacattcctcaactcatcttgcaatttatgcat 210  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||    
T  1073 tgatcacagctttcaagtagttcatattaaccaaatcatcttcagttacatgagttttgttgccaaccacagttctcacctcatcttgcaatttatgcat 974  T
Q  211 cacagtttggtgtcttaatagttctgtcatcgcccattctagaactgtgtaggttgtgtctgtacctgcagcaaacatgtcctacatg 298  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || || |||||||| ||||||||||||||||||    
T  973 cacagtttggtgtcttaataattctgtcattgcccattctagaactgtgtaggtagtatcagtacctgcggcaaacatgtcctacatg 886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 15867671 - 15867623
Alignment:
Q  356 atcaatcataatcgtcacatcattaaaaatatttgacattaatcataac 404  Q
    ||||||||||||||||| |||||||||| | |||||| |||||||||||    
T  15867671 atcaatcataatcgtcatatcattaaaactgtttgactttaatcataac 15867623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 14004332 - 14004385
Alignment:
Q  351 tgtcgatcaatcataatcgtcacatcattaaaaatatttgacattaatcataac 404  Q
    |||| ||||||||||||||| | |||||| |||||| ||||| |||||||||||    
T  14004332 tgtcaatcaatcataatcgtgagatcatttaaaataattgactttaatcataac 14004385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 24887791 - 24887743
Alignment:
Q  356 atcaatcataatcgtcacatcattaaaaatatttgacattaatcataac 404  Q
    ||||||||||| ||||| ||||| ||||||||||||| | |||||||||    
T  24887791 atcaatcataaccgtcatatcataaaaaatatttgacttaaatcataac 24887743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 33657411 - 33657459
Alignment:
Q  356 atcaatcataatcgtcacatcattaaaaatatttgacattaatcataac 404  Q
    ||||||||||| ||||| |||||| |||||||||||| |||| ||||||    
T  33657411 atcaatcataaccgtcaaatcattgaaaatatttgactttaaccataac 33657459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University