View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-11 (Length: 590)
Name: NF5092-Insertion-11
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 41804360 - 41804942
Alignment:
| Q |
8 |
gttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaat |
107 |
Q |
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| T |
41804360 |
gttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaat |
41804459 |
T |
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| Q |
108 |
ctcaaaagtttggtcattgtatagattgtatgattttgtataaaatgtgtttggttaatccttacctttggactttgcatgacaacttttgtccttctat |
207 |
Q |
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| T |
41804460 |
ctcaaaagtttggtcattgtatagattgtatgattttgtataaaatgtgtttggttaatccttacctttggactttgcatgacaccttttgtccttctat |
41804559 |
T |
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| Q |
208 |
agatcacacaagtaacaatatcgcatctagtggcaaagatgctcctcaagttgtaagtggtattccatgatcaatgatcatttgtgtggcaatgacttgt |
307 |
Q |
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| T |
41804560 |
agatcacacaagtaacaatatcgcatctagtggcaaagatgctcctcaagttgtaagtgatattccatgatcaatgatcatttgtgtggcaatgacttgt |
41804659 |
T |
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| Q |
308 |
gttgtgtcttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagaggctaatatgtaacataaaaatttgtagctaaataacct |
407 |
Q |
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| T |
41804660 |
gttgtgtgttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagagactaatatgtaacataaaaatttgtagctaaataacct |
41804759 |
T |
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| Q |
408 |
ttatgggcagggtatgggctcttcttagatatatgtcttgtggaggatagatgtattttatatttgttcgatgaactttgtattatggttataattaaag |
507 |
Q |
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| T |
41804760 |
ttatgggcagggtatgggctcttcttagatatatgtcttgtggaggatagatgtattttatatttgttcgatgaactttgtactatggttataattaaag |
41804859 |
T |
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| Q |
508 |
gtaagtgatgttttattaagtacattgaatgactccattcatattttggttctttggtccctcaagcaaattctactggtcct |
590 |
Q |
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| T |
41804860 |
gtaagtgatgttttattaagtacattgaatgagtccattcatattttggttctttggtccctcaagcaaattctactggtcct |
41804942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 3385078 - 3385483
Alignment:
| Q |
8 |
gttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaat |
107 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||| |
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| T |
3385078 |
gttctagtttcccttgtagtggcaatacttctgaatggttataatgccgaggatggaggaagaggtaatcaactgaagaaagatgatgctatttacaaat |
3385177 |
T |
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| Q |
108 |
ctcaaaagtttggtcattgtatagattgtatgattttgtataaaatgtgtttggttaatccttacctttggactttgcatgacaacttttgtccttctat |
207 |
Q |
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| T |
3385178 |
ctcaaaagtttgggcaatgtctagattgtacgattttgtataatatatgtttggttaatccttacctttggactttgcatgacaagttttgttcttctaa |
3385277 |
T |
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| Q |
208 |
agatcacacaagtaacaatatcgcatctagtggcaaagatgctcctcaagttgtaagtggtattccatgatcaatgatcatttgtgtggcaatgacttgt |
307 |
Q |
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||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||| ||||| |
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| T |
3385278 |
tgattacagaagtaacaagatcgcatccagtggcaaagatgctcctcaagttgtaagtgatcttccatgatcaatgatcgtttgtgtttcaatggcttgt |
3385377 |
T |
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| Q |
308 |
gttgtgtcttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagaggctaatatgtaacataaaaatttgtagctaaataacct |
407 |
Q |
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| T |
3385378 |
gttgtgtgttatattaatatatctatatgtatctaaataaaacaatgttgtgtgagtaagagagtaatatgcaacataaaaatttgtagctaaataacct |
3385477 |
T |
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| Q |
408 |
ttatgg |
413 |
Q |
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|||||| |
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| T |
3385478 |
ttatgg |
3385483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 3385622 - 3385680
Alignment:
| Q |
437 |
tatatgtcttgtggaggatagatgtattttatatttgttcgatgaactttgtattatgg |
495 |
Q |
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| T |
3385622 |
tatatatcttgtggatgatagatatattttatatttgttctattgactttgtattatgg |
3385680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 590
Target Start/End: Original strand, 3385719 - 3385801
Alignment:
| Q |
508 |
gtaagtgatgttttattaagtacattgaatgactccattcatattttggttctttggtccctcaagcaaattctactggtcct |
590 |
Q |
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| T |
3385719 |
gtaagggatattttattaagtaaattgaacgactccattgagattttggatcttcagtccttcaaacaaattctattggtcct |
3385801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 4215651 - 4215726
Alignment:
| Q |
39 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
114 |
Q |
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| T |
4215651 |
tgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
4215726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 41814389 - 41814327
Alignment:
| Q |
88 |
agatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataa |
150 |
Q |
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| T |
41814389 |
agatgatcatatttacaaatctcaaaagcttgatcagggtatcgattgtttgattttgtataa |
41814327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 4218239 - 4218271
Alignment:
| Q |
86 |
aaagatgatggtatttacaaatctcaaaagttt |
118 |
Q |
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| T |
4218239 |
aaagatgatcgtatttacaaatctcaaaagttt |
4218271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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