View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-12 (Length: 427)
Name: NF5092-Insertion-12
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 5400340 - 5400759
Alignment:
| Q |
8 |
tttcattatccatgccatcatgattgacatacaatgtaagtaaagtttattgtcctctcataatcgtggcagttttgatcgcataattgctactgatgag |
107 |
Q |
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| T |
5400340 |
tttcattatccatgccatcatgattgatataaaatgtaagtaaaatttattgtcctctcataatcgtggcagttttgatcgcataattgctactgatgag |
5400439 |
T |
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| Q |
108 |
taattctctaaaacatggaatctaagaacaaatatttatcccttttgccaatgggaaacatggaatctaaaataatactaggataggattttgggtaaaa |
207 |
Q |
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| T |
5400440 |
taattctctaaaacatggaatctaagaacaaatatttatcccttttgccaatgggaaacatggaatctaaaataatactaggataggattttgggtaaaa |
5400539 |
T |
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| Q |
208 |
acaattttgatatctaaatgtgtgaaggattgtccttatatatcaaaattgttaacatattctcaagtgtctttttagttagtcattttgctcttcttac |
307 |
Q |
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| T |
5400540 |
acaattttgatatctaaatgtgtgaaggattgtcgttatatatcaaaattgttaacatattctcaagtgtccttttagttagtcattttgctcttcttac |
5400639 |
T |
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| Q |
308 |
aagtcaatttagtcataaaatgtgtttttcgtaagtcaatttaaactataaattacaaacaagatataaaccgaaggtatgtgcaattttgatatactta |
407 |
Q |
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| T |
5400640 |
aagtcaatttagtcataaaatatgtttttcgtaagtcaatttaaactataaattacaaacaagatataaacttaaggtatgtgcaattttgatatactta |
5400739 |
T |
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| Q |
408 |
gagactataatgacatcgtc |
427 |
Q |
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| T |
5400740 |
gagactataatgacatcgtc |
5400759 |
T |
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