View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-13 (Length: 283)
Name: NF5092-Insertion-13
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-13 |
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| [»] chr7 (7 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 47283854 - 47283579
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47283854 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
47283755 |
T |
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| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47283754 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccct |
47283655 |
T |
|
| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcgg |
283 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47283654 |
aaaccttgaacgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcgg |
47283579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 47279261 - 47278990
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47279261 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccat |
47279162 |
T |
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| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47279161 |
aacctaaaggatttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccct |
47279062 |
T |
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| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgt |
279 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47279061 |
aaaccttgaacgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgt |
47278990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 47242985 - 47242710
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
47242985 |
gtaaataaacatcgttccttaataaccataaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcat |
47242886 |
T |
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| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
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||||||| ||||||||||||||| | ||||||||||||||| |||| |||||||| || ||||| ||||||||||||| ||| ||| ||| | |
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| T |
47242885 |
aacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatgcaattaccgtaatatccaacaaacaaagaagggttagcact |
47242786 |
T |
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| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcgg |
283 |
Q |
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|||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
47242785 |
aaacctggaacgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcgg |
47242710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 47298966 - 47299240
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||| |
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| T |
47298966 |
gtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcat |
47299065 |
T |
|
| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
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|||| || ||||||||||||||||||| ||| |||||||| || || ||| |||||||||||||||| || ||||||||||||||||||| || | | | |
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| T |
47299066 |
aaccaaatgggtttccacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaattgttaacatt |
47299165 |
T |
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| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcg |
282 |
Q |
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|||||| || |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
47299166 |
aaacctcgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcg |
47299240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 47292359 - 47292633
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||||||| |
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| T |
47292359 |
gtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcat |
47292458 |
T |
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| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
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|||| || || |||||||||||||||||||| |||||||| || || ||| |||||||||||||||| |||||||||||||||||||||| || | | |
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| T |
47292459 |
aaccaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgttaatgtt |
47292558 |
T |
|
| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcg |
282 |
Q |
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|||||| || |||||||| ||| ||||||||||||||| |||| ||| | |||||||||||||||||||||||| |
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| T |
47292559 |
aaacctcgagcgtgcattgacgacgcacatcattcgtacctctttatccgcctctaactgcaatgcttttgtgcg |
47292633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 47257112 - 47256834
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| || |||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47257112 |
gtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcat |
47257013 |
T |
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| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatgg---tcagc |
204 |
Q |
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||||||| ||||||||||||||| | |||||||||||| || |||| |||||||| |||||| ||||||||||||| || | |||| || | ||| |
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| T |
47257012 |
aacctaattggtttccacaaagctcctttgcggtggtgactgccgccgagaaagcaatacagttgccataatatccaatgagcgacgaacggttattagc |
47256913 |
T |
|
| Q |
205 |
cgtaaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcgg |
283 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||||| || ||||||||||| |||| ||||||||||||||||||| |
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| T |
47256912 |
actaaacctcgagcgtgcattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcgg |
47256834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 47267889 - 47267615
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||| | ||||||||| ||||| |||||||||| ||||||| |||||||| ||| ||||| |||| |
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| T |
47267889 |
gtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacagcat |
47267790 |
T |
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| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| || ||||||||||||||||||| || ||| | |
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| T |
47267789 |
aacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaattgttagcatt |
47267690 |
T |
|
| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcg |
282 |
Q |
| |
|
|||||| ||||||||||| | || ||||||||||||| || ||||||| |||||||||||||||||||||||| |
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| T |
47267689 |
aaacctcgaacgtgcattgacaatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcg |
47267615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 32731652 - 32731377
Alignment:
| Q |
8 |
gtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
32731652 |
gtaaataaacatcgttccttaataaccatacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcat |
32731553 |
T |
|
| Q |
108 |
aacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccgt |
207 |
Q |
| |
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||||||| ||||||||||||||| | ||||||||||||||| |||| |||||||| ||| ||||| |||||||||| || ||| ||| ||| | |
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| T |
32731552 |
aacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatacaattaccgtaatatccaataaacaaagaagggttagcact |
32731453 |
T |
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| Q |
208 |
aaaccttgaacgtgcattagcgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcgg |
283 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
32731452 |
aaacctggaacgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcgg |
32731377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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