View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-14 (Length: 193)
Name: NF5092-Insertion-14
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-14 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 41735891 - 41735783
Alignment:
| Q |
85 |
gggaaagtctagggtgggagagcttcataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtgaagctctatggttgttaac |
184 |
Q |
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| T |
41735891 |
gggaaagtctagggtgggagagcttgataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtgaagctctatggttgttaac |
41735792 |
T |
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| Q |
185 |
atgtactca |
193 |
Q |
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||||||||| |
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| T |
41735791 |
atgtactca |
41735783 |
T |
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Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 8711432 - 8711324
Alignment:
| Q |
85 |
gggaaagtctagggtgggagagcttcataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtgaagctctatggttgttaac |
184 |
Q |
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| T |
8711432 |
gggaaagtcttgggtgggagagcttcataggtctctcaccataggtaaggaagaatattgtttttcagccattagatagtgaagctctatggttgttaac |
8711333 |
T |
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| Q |
185 |
atgtactca |
193 |
Q |
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| T |
8711332 |
atgtactca |
8711324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 28225080 - 28225048
Alignment:
| Q |
92 |
tctagggtgggagagcttcataggtctctcacc |
124 |
Q |
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| T |
28225080 |
tctagggtgggagagcttaataggtctctcacc |
28225048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 22369638 - 22369742
Alignment:
| Q |
89 |
aagtctagggtgggagagcttcataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtgaagctctatggttgttaacatgt |
188 |
Q |
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| T |
22369638 |
aagtctagggtgggagagcttgataggtctctcaccataggcaaggaagaatattgtttttcagccactagatagtgaagctctatggttgttaacatgt |
22369737 |
T |
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| Q |
189 |
actca |
193 |
Q |
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||||| |
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| T |
22369738 |
actca |
22369742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 8070201 - 8070278
Alignment:
| Q |
7 |
agttaccaatagttcttgaaccaataatcttacctcttttagttgccttcaaaatccacaatgtcctctctgctttag |
84 |
Q |
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| T |
8070201 |
agttactaatagttcttgatccaatgatcttacctcgtttggttgcctccaaaatccacaatgtcctctctgctttag |
8070278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 5666000 - 5666074
Alignment:
| Q |
93 |
ctagggtgggagagcttcataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtgaa |
167 |
Q |
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| T |
5666000 |
ctagggtgggagagcttgataggtctctcactgtaggagagcaaaaatatttattttcagccgttggatagtgaa |
5666074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 12846027 - 12846110
Alignment:
| Q |
93 |
ctagggtgggagagcttcataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtg-aagctctatg |
175 |
Q |
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| T |
12846027 |
ctagggtgggagagcttgataggtctctcaccgtgggagagtaaaaatatttattttcagccgttggatagtgaaagctctatg |
12846110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 44123605 - 44123522
Alignment:
| Q |
93 |
ctagggtgggagagcttcataggtctctcaccataggcaaggaagaatattgtttttcagccattagatagtg-aagctctatg |
175 |
Q |
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||||||||||||||||| |||||||||||||| | || || || |||||| ||||||||| || ||||||| |||||||||| |
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| T |
44123605 |
ctagggtgggagagcttgataggtctctcaccgtgggagagtaaaaatatttattttcagccgttggatagtgaaagctctatg |
44123522 |
T |
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