View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-3 (Length: 1127)
Name: NF5092-Insertion-3
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 4e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 465 - 700
Target Start/End: Complemental strand, 31925724 - 31925488
Alignment:
| Q |
465 |
tattgtgtggtttgggtgcagggttcccttaatctttggctgg---tgtagttctttgccgttggttcgaccattgctctcctttattgttctgtatgtg |
561 |
Q |
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| T |
31925724 |
tattgtgtggtttgggtgcagggttctgttaatctttggctgcagttgtagttctttgccattgtttcagccattgctctcctttattgtcttgtgtgtg |
31925625 |
T |
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| Q |
562 |
ccagttggtgttgctgcagttttgtttctggtattgtcttgattttatgttagttgagactatgtttttggattctaatttggttcataattggagtgca |
661 |
Q |
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| T |
31925624 |
ccagttggtgttgctgcagttttgtttctggtattgccttgattttatgttagctgagactatgtttttggattctaatttggttcataaatgga-tgca |
31925526 |
T |
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| Q |
662 |
caaccatttacttaagtggttatcatttgaagttattat |
700 |
Q |
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| T |
31925525 |
cagcca-ttacttaagtggttatcatttgaagttgttat |
31925488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 738 - 987
Target Start/End: Complemental strand, 31901274 - 31901017
Alignment:
| Q |
738 |
tgttattttgttgtcttgaacacaaatattatgatgtggtgctgctgttttgttttgacagccagttttgtgttatctcaataacttttggttgttnnnn |
837 |
Q |
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| T |
31901274 |
tgttattttgttgtcttgaacacaactattatgatgtggtgctgctgttatgttttgacagccagatctgtgttatctcaataacttttggttgttaaaa |
31901175 |
T |
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| Q |
838 |
nnnn---gctttatggccattaaatgttttc-atgtaaatactaataacatacacaatttgattttattagtagagaagaat-aggataaatcatga-ca |
931 |
Q |
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| T |
31901174 |
aaaaaaagctttgtggccattaaatgttttctatgtaaatactaataacatacatagtttgattatgttagtagagaataatcaggataaatcatcaaca |
31901075 |
T |
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| Q |
932 |
ctaatgcatcctatatgc--aatcttagttgaatttaagatgatgcatgttctgttag |
987 |
Q |
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| T |
31901074 |
ctaatgcatcctatatggcaaatcttagttgaatttaagatgatgcatgttctgttag |
31901017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 31925788 - 31925749
Alignment:
| Q |
431 |
atattgtatgattttgctattatattctccttaatattgt |
470 |
Q |
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| T |
31925788 |
atattgtatgtttttgctatcatattctccttaatattgt |
31925749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 603 - 668
Target Start/End: Original strand, 24511449 - 24511514
Alignment:
| Q |
603 |
attttatgttagttgagactatgtttttggattctaatttggttcataattggagtgcacaaccat |
668 |
Q |
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| T |
24511449 |
atttcatgttagttgagactatatttttggattgtaattttgttcgtaattgaaatgcacatccat |
24511514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 472 - 564
Target Start/End: Complemental strand, 8399341 - 8399249
Alignment:
| Q |
472 |
tggtttgggtgcagggttcccttaatctttggctggtgtagttctttgccgttggttcgaccattgctctcctttattgttctgtatgtgcca |
564 |
Q |
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| T |
8399341 |
tggtttgggtgcagggttccctttatcctgggttggtgccgttcgttgtcgttgttccggccatcgctctcctttattgctctctgtgtgcca |
8399249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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