View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5092-Insertion-4 (Length: 1061)

Name: NF5092-Insertion-4
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5092-Insertion-4
NF5092-Insertion-4
[»] chr1 (3 HSPs)
chr1 (393-762)||(8784686-8785055)
chr1 (259-307)||(30613113-30613161)
chr1 (261-306)||(30725839-30725884)
[»] chr8 (3 HSPs)
chr8 (199-313)||(9200328-9200442)
chr8 (206-309)||(44061280-44061383)
chr8 (8-38)||(9200604-9200634)
[»] chr6 (2 HSPs)
chr6 (214-309)||(3711521-3711616)
chr6 (259-313)||(32818813-32818867)
[»] chr5 (4 HSPs)
chr5 (214-309)||(27878690-27878785)
chr5 (258-313)||(18515722-18515777)
chr5 (259-306)||(30670478-30670525)
chr5 (259-309)||(12464224-12464274)
[»] chr3 (5 HSPs)
chr3 (206-309)||(14092842-14092945)
chr3 (206-304)||(33647151-33647249)
chr3 (259-309)||(24346160-24346210)
chr3 (259-309)||(28255166-28255216)
chr3 (259-309)||(43884992-43885042)
[»] chr2 (3 HSPs)
chr2 (206-309)||(4681573-4681676)
chr2 (206-297)||(1777199-1777290)
chr2 (206-301)||(13979025-13979120)
[»] chr7 (4 HSPs)
chr7 (259-309)||(34996740-34996790)
chr7 (233-309)||(40786287-40786363)
chr7 (259-306)||(42271079-42271126)
chr7 (259-304)||(20383831-20383876)
[»] chr4 (3 HSPs)
chr4 (259-306)||(10310655-10310702)
chr4 (259-304)||(33633165-33633210)
chr4 (259-304)||(39121229-39121274)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 393 - 762
Target Start/End: Complemental strand, 8785055 - 8784686
Alignment:
Q  393 ttaaaatgacatttctatattaaggtttttaatatctacatttcagacacaaattaacatttgtctaattatttttaccaccactttaaagacaaacaaa 492  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8785055 ttaagatgacatttctatattaaggtttttaatatctacatttcggacaaaaattaacatttgtctaattatttttaccaccactttaaagacaaacaaa 8784956  T
Q  493 caacctcaattttactccttttatctacctcggttcactctctatttgtacaagaaatgagtataagtgataaattagttggaccctttttaataagtgg 592  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8784955 caacttcaattttactccttttatctacctcggttcactctctatttgtacaagaaatgagtataagtgataaattagttggaccctttttaataagtgg 8784856  T
Q  593 attccactaaatcaattatgtttgcgctgcctcgattcgttttcgtcatgacttcacaatcctcaactctttatcaaatgagagaaaaaccaaataaaat 692  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8784855 attccactaaatcaattatgtttgcgctgcctcgattcgctttcgtcatgacttcacaatcctcaactctttatcaaatgagagaaaaaccaaataaaat 8784756  T
Q  693 aaatagattttcatattttgttttcataaggttcagctaagagacacttcatctaactattaataagctt 762  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8784755 aaatagattttcatattttgttttcataaggttcagctaagagacacttcatctaactattactaagctt 8784686  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 30613161 - 30613113
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatac 307  Q
    ||||||||||| || ||||||||||||||||||||| | ||||||||||    
T  30613161 acttctctcttctctatttctcttctatctctcttaaatcaaacaatac 30613113  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 30725839 - 30725884
Alignment:
Q  261 ttctctcttttcaatttctcttctatctctcttataccaaacaata 306  Q
    |||| ||| ||| ||||||||||| |||||||||||||||||||||    
T  30725839 ttctttctcttctatttctcttctttctctcttataccaaacaata 30725884  T

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Target: chr8 (Bit Score: 103; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 199 - 313
Target Start/End: Complemental strand, 9200442 - 9200328
Alignment:
Q  199 ttggtataaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttatacc 298  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9200442 ttggtacaaatattagattttttagatagggacatttttgtcaactcataaaatcattcaacttctctcttttcaatttctcttcgatctctcttatacc 9200343  T
Q  299 aaacaatacattaaa 313  Q
    |||||||||||||||    
T  9200342 aaacaatacattaaa 9200328  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 44061383 - 44061280
Alignment:
Q  206 aaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaat 305  Q
    |||||| |||||||||||| |||| | ||||| | || ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44061383 aaatataagattttttagagaggggcttttttatcaattcataaaattattcaacttctctcttttcaatttctctcatatctctcttataccaaacaat 44061284  T
Q  306 acat 309  Q
    ||||    
T  44061283 acat 44061280  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 9200634 - 9200604
Alignment:
Q  8 gtatacacataactattttgataagttatag 38  Q
    |||||||||||||||||||||||||||||||    
T  9200634 gtatacacataactattttgataagttatag 9200604  T

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Target: chr6 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 3711616 - 3711521
Alignment:
Q  214 gattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  3711616 gattttttagatagggacatttttgtcaactcataaaatcatccaacttctctcttttcaatttctcttatatctctcttatatcaaacaatacat 3711521  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 32818867 - 32818813
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatacattaaa 313  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  32818867 acttctctcttctcaatttcttttctatctctcttataccaaacaatccattaaa 32818813  T

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Target: chr5 (Bit Score: 80; Significance: 6e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 27878785 - 27878690
Alignment:
Q  214 gattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  27878785 gattttttagatagggacatttttgtcaactcataaaatcatccaacttctctcttttcaatctctcttctatctctcttatatcaaacaatacat 27878690  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 18515777 - 18515722
Alignment:
Q  258 aacttctctcttttcaatttctcttctatctctcttataccaaacaatacattaaa 313  Q
    ||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||    
T  18515777 aacttctctcttttctatttctcttctctttcttttataccaaacaatacattaaa 18515722  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 30670525 - 30670478
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaata 306  Q
    |||||| ||| ||| ||||||||||| |||||||||||||||||||||    
T  30670525 acttctttctcttctatttctcttctttctctcttataccaaacaata 30670478  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 12464224 - 12464274
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    |||||||||||||| ||||||||||| ||||| ||| ||||||||| ||||    
T  12464224 acttctctcttttctatttctcttctctctcttttaaaccaaacaacacat 12464274  T

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Target: chr3 (Bit Score: 80; Significance: 6e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 14092842 - 14092945
Alignment:
Q  206 aaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaat 305  Q
    |||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  14092842 aaatataagatttttttgagagggacatttttgtcaactcataaaatcattcaacttctctcttttcaatttctctcctatctctgttataccaaacaat 14092941  T
Q  306 acat 309  Q
    ||||    
T  14092942 acat 14092945  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 33647151 - 33647249
Alignment:
Q  206 aaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaa 304  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| || ||||| |||||||| ||||||    
T  33647151 aaatattagattttttaggtagggacatttttgtcaactcataaaatcattcaacttctttcttttctatttcttttttatctatcttatacgaaacaa 33647249  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 24346160 - 24346210
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    |||||||||| ||| ||||||||  ||||||||||||||||||||| ||||    
T  24346160 acttctctctcttctatttctctcatatctctcttataccaaacaacacat 24346210  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 28255166 - 28255216
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    |||||||||| ||| ||||||||  ||||||||||||||||||||| ||||    
T  28255166 acttctctctcttctatttctctcatatctctcttataccaaacaacacat 28255216  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 43885042 - 43884992
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    |||||||||| ||| ||||||||  ||||||||||||||||||||| ||||    
T  43885042 acttctctctcttctatttctctcatatctctcttataccaaacaacacat 43884992  T

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Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 4681676 - 4681573
Alignment:
Q  206 aaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaat 305  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||     
T  4681676 aaatgttagattttttaggtagggacatttttgtcaactcataaaatcattcaatttctttattttctatttctcttctatctctcttataccaaacaac 4681577  T
Q  306 acat 309  Q
    ||||    
T  4681576 acat 4681573  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 1777199 - 1777290
Alignment:
Q  206 aaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttatac 297  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  1777199 aaatattagattttttaggtagggacatttttgtcaacttataaaatcattcaacttctttattttctatttctcttctatctctcttatac 1777290  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 13979025 - 13979120
Alignment:
Q  206 aaatattagattttttagatagggacatttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaa 301  Q
    ||||||||||||||||||||  |||||||||| | |||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  13979025 aaatattagattttttagatgaggacatttttatcaacttataaaatcattcaacttctttcttttctatttctattctatctctcttataccaaa 13979120  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 34996740 - 34996790
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  34996740 acttctctcttctctatttctcttctttctctcttataccaaacaatacat 34996790  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 40786287 - 40786363
Alignment:
Q  233 tttttgttaactcataaaatcattcaacttctctcttttcaatttctcttctatctctcttataccaaacaatacat 309  Q
    ||||||| || ||||||| ||||||||||||| ||| ||| |||| | |  | ||||||||||||||||||||||||    
T  40786287 tttttgtcaattcataaattcattcaacttctttctcttctatttgtatcttttctctcttataccaaacaatacat 40786363  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 42271126 - 42271079
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaata 306  Q
    |||||| ||| ||| ||||||||||| |||||||||||||||||||||    
T  42271126 acttctttctcttctatttctcttctttctctcttataccaaacaata 42271079  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 20383831 - 20383876
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaa 304  Q
    ||||||||||| ||||||||| |||| | |||||||||||||||||    
T  20383831 acttctctcttctcaatttcttttctctatctcttataccaaacaa 20383876  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 10310702 - 10310655
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaata 306  Q
    |||||| ||| ||| ||||||||||| |||||||||||||||||||||    
T  10310702 acttctttctcttctatttctcttctttctctcttataccaaacaata 10310655  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 33633210 - 33633165
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaa 304  Q
    |||||| |||| || ||||||||||| |||||||||||||||||||    
T  33633210 acttctttcttctctatttctcttctttctctcttataccaaacaa 33633165  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 39121274 - 39121229
Alignment:
Q  259 acttctctcttttcaatttctcttctatctctcttataccaaacaa 304  Q
    |||||||||||||| |||||| |||| | |||||||||||||||||    
T  39121274 acttctctcttttctatttcttttctctttctcttataccaaacaa 39121229  T

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