View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-5 (Length: 1053)
Name: NF5092-Insertion-5
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 639 - 1035
Target Start/End: Complemental strand, 45131536 - 45131141
Alignment:
| Q |
639 |
gtaccaacttgtgtcgttttacggactaaatataatgtaaaaagaaaacttgttcccatagaatagaaagctagcttgtcgttccnnnnnnnnntgaggc |
738 |
Q |
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| T |
45131536 |
gtaccaatttgtgtcgttttacggactaaatataatataaaaagaaaacttgttcccatagaatagaaagctagcttgtccttccaaaaaaaa-tgaggc |
45131438 |
T |
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| Q |
739 |
agaatgtataagagttttgtccactctccttttattattaaatgtagtaatgtactctttctttggtcatcacatttaattcatgcaaaacatagaggaa |
838 |
Q |
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| T |
45131437 |
agaatgtataagagttttgtccactctccttttattattaaatgtagtaatgtactctttctttggtcatcacagttaattcatgcaaaacatagaggaa |
45131338 |
T |
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| Q |
839 |
agaaagacattaattcatgcacacatgtgcaattgcacttcttcacaatggcctaataatg-aaaagacattaattcatgtacaagcacacatgtgcaat |
937 |
Q |
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| T |
45131337 |
agaaagacattaattcatgcacacatgtgcaattgcacttcttcacaatggcctaataatgaaaaagacattaattcatgtacaagcacacatgtgcaat |
45131238 |
T |
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| Q |
938 |
tgcacttcttcacattacctaattataatatagaagaatcaacacgtacattttagaagatggcagaaggcatatatatacgacatgtacattgatgc |
1035 |
Q |
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| T |
45131237 |
tgcacttcttcacattgcctaattataatatagaagaatcaacacgtacattttag-agatggtagaaggcatatatatacgacatgtacattgatgc |
45131141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 905 - 1031
Target Start/End: Complemental strand, 45114363 - 45114233
Alignment:
| Q |
905 |
acattaattcatgtacaagcacacatgtgcaattgcacttcttcac-attacctaattataat---atagaagaatcaacacgtacattttagaagatgg |
1000 |
Q |
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| T |
45114363 |
acattaattcatgtacaggcacacttgtgcaattgcacttgttcacgattgcctaattataataacatagaggaatcaacatgaacgttttagaggatag |
45114264 |
T |
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| Q |
1001 |
cagaaggcatatatatacgacatgtacattg |
1031 |
Q |
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| T |
45114263 |
taaaaggcatatatatgcgacatgtacattg |
45114233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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