View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5092-Insertion-8 (Length: 723)

Name: NF5092-Insertion-8
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5092-Insertion-8
NF5092-Insertion-8
[»] chr5 (3 HSPs)
chr5 (112-723)||(4665347-4665961)
chr5 (8-58)||(4666099-4666149)
chr5 (79-121)||(4666037-4666079)


Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 112 - 723
Target Start/End: Complemental strand, 4665961 - 4665347
Alignment:
Q  112 atattgtattctcaatttccgctgttggcaatgcagaaagaacaaacgaagatagaaaaggaaaaactcaccccaacacagaagtaaacgacaaaaagaa 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4665961 atattgcattctcaatttccgctgttggcaatgcagaaagaacaaacgaagatagaaaaggaaaaactcaccccaacacagaagtaaacgacaaaaagaa 4665862  T
Q  212 accacataattagannnnnnnnnnnnnnnnnnnnnnnncaaaatggcgtgtcaagaggata----acgatattattagatgatagtgtaaataagtttta 307  Q
    | ||||||||||||                        |||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||    
T  4665861 aacacataattagattttcttttttaagttttttatttcaaaatggcgtgtcaagaggatagataacgatattattagatgataatgtaaataagtttta 4665762  T
Q  308 tattgttattatgcatgaattaatctatttgaaaataggttagattcatttactatttaaaatttatctattataattaatgggaaacacagagagatca 407  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4665761 tattgttattatgcatgaattaatctatttgaaataaggttagattcatttactatttaaaatttatctattataattaatgggaaacacagatagatca 4665662  T
Q  408 aagaaactaaattaatgccacagctttttagaattggtctggattttttgttactgcagagactagaaaaattaattcaatctttcgaagaccaagataa 507  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4665661 aagaaactaaattaatgccacagctttttagaattggactagattttttgttactgcagagactagaaaaattaactcaatctttcgaagaccaagataa 4665562  T
Q  508 tgatatcagcatctaatgactttactactatcctaaactatgaacataaataacgccacagcccacattgaatttatgatgtctcactctcacagcacaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4665561 tgatatcagcatctaatgactttactactatcctaaactatgaacataaataacaccacagcccacattgaatttatgatgtctcactctcacagcacaa 4665462  T
Q  608 tattaacacaaaaataaacaagattttgtcatgtcaattgtcaagaaataacccctttaaagtgagatttgtacacaaactccacaaaagatatatttct 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4665461 tattaacacaaaaataaacaagattttgtcatgtcaattgtcaagaaataa-ccctttaaagtgagatttgtacacaaactccacaaaagatatatttct 4665363  T
Q  708 ctgaaacttccagtct 723  Q
    ||||||||||||||||    
T  4665362 ctgaaacttccagtct 4665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 4666149 - 4666099
Alignment:
Q  8 catttatcttacccgattaagtccattatcttttaaagcatgaacacaaag 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4666149 catttatcttacccgattaagtccattatcttttaaagcatgaacacaaag 4666099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 4666079 - 4666037
Alignment:
Q  79 cattcaagaaacacttgtctgttgcaaactaaaatattgtatt 121  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  4666079 cattcaaaaaacacttgtctgttgcaaactaaaatattgtatt 4666037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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