View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092-Insertion-9 (Length: 670)
Name: NF5092-Insertion-9
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 488
Target Start/End: Original strand, 3545150 - 3545628
Alignment:
| Q |
7 |
atgtgaaattactgtttagaattcatcaatctagtttcagtgaacgagtttatgaatctattgatttcaggataattgtgctgagtttttctatatccac |
106 |
Q |
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| T |
3545150 |
atgtgaaattactgtttagaattcatcaatctagtttcagtgaacgagtttatgaatcttttgatttcaggataattgtgctgagtttttctatatccac |
3545249 |
T |
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| Q |
107 |
tgctagcttctgcactgtgcactaacattagtagttggacttatcnnnnnnnnnnnnnnnnncactagttgttggaatacaaaattctatttctagtttt |
206 |
Q |
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| T |
3545250 |
tgctagcttctgcactgtgcactaacattagtagttggacatatcaaaaaaaaaaaaaa---cactagttgttggaatacaaaattctatttctagtttt |
3545346 |
T |
|
| Q |
207 |
acaccaaagtgcttgttccatcttttaagacaattgcttgttcactttttgagtatttattttgttacacttctcttccatcatatttacaccttctgtc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3545347 |
acaccaaagtgcttgttccatcttttaagacaattgcttgttcactttttgagtatttattttgttacacttctcttccatcatatttacatcttctgtc |
3545446 |
T |
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| Q |
307 |
tcttaaatctagacttaatcaaaataccacttggtaactttagcaaatttgaatcattggatgaaaatataacgattaacatttcaaatttgtggaggaa |
406 |
Q |
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| T |
3545447 |
tcttaaatctagacttaatcaaaataccacttggtaactttagcaaatttgaatcattggatgaaaatataacgactaacatttcaaatttgtggaggaa |
3545546 |
T |
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| Q |
407 |
aaatatgagtcgtttaatcttcatctggtttcacattgtagacaataatgattgtcattttttacaataatatgtaccaatc |
488 |
Q |
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| T |
3545547 |
aaatatgagtcgtttaatcttcatctggtttcacattgtagacaataatgattgtcattttttacaataatatgtaccaatc |
3545628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 492
Target Start/End: Original strand, 472335 - 472379
Alignment:
| Q |
449 |
caataatgattgtcatttt-ttacaataatatgtaccaatctctc |
492 |
Q |
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| T |
472335 |
caataatgattgtcatttttttacaataacatgtaccaatctctc |
472379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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