View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092_high_16 (Length: 241)
Name: NF5092_high_16
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 3545155 - 3544935
Alignment:
| Q |
20 |
tcacattcttcaatacagaaacctgtttcaatacaccataagaaacacctatattacacaaataccctcagaatatgatttttgtatacatcatgcatca |
119 |
Q |
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| T |
3545155 |
tcacattcttcaatacagaaacctgtttcaatacaccataagaaacacctatattacacaaataccctcagaatatgatttttgtatacatcatgcatca |
3545056 |
T |
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| Q |
120 |
aaaagaaccacacaagactgaatctagattttgagaagagagacttttcatcagttgagggaaaacattgacaaaacagttgaacaagtacaacagaccg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3545055 |
aaaagaaccacacaagactgaatctagattttgagaagagagacttttcatcagttgagggaaaacattgacaaaacagttgaacaagtacaacagaacg |
3544956 |
T |
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| Q |
220 |
atttaaggagtttctgcagtt |
240 |
Q |
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||||||||||||||||||||| |
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| T |
3544955 |
atttaaggagtttctgcagtt |
3544935 |
T |
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