View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5092_high_17 (Length: 237)
Name: NF5092_high_17
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_high_17 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 27604311 - 27604499
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27604311 |
tattcatgtccaataagataagttagtatgtaa----caacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacat |
27604406 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattga |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27604407 |
ataaataactaatacttgtttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattga |
27604499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 26803021 - 26802835
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
26803021 |
tattcatgtccaacaagataagttagtatgtact-aacaacatcacaatcacatccatgtac--tcataatatattatacatttctaactatttcaacat |
26802925 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattga |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || | ||||||||| || ||||||||||| || |||||||||||||| ||||||| |||| |
|
|
| T |
26802924 |
ataaataactaatacttgtttaaaaacgtatataagaaaggtatt---tcccatttaacctttaagatgagattattgggaaattgaagttga |
26802835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 27427219 - 27427356
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| || |||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27427219 |
tattcatgtccaataatataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacat |
27427314 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
27427315 |
ataaataactaacaattgtttaaaaacataaataaaaaaggt |
27427356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 28786813 - 28786677
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
28786813 |
tattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacat |
28786720 |
T |
|
| Q |
118 |
ataaataactaaa-acttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
28786719 |
aaaaataattaaatacttgtttaaaaacgtaaatagaaaaggt |
28786677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 28792934 - 28792798
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
28792934 |
tattaatgtccgataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacat |
28792841 |
T |
|
| Q |
118 |
ataaataactaaa-acttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
28792840 |
aaaaataattaaatacttgtttaaaaacgtaaatagaaaaggt |
28792798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 28781676 - 28781549
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
28781676 |
tattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacat |
28781583 |
T |
|
| Q |
118 |
ataaataactaaa-acttgtttaaaaacgtaaat |
150 |
Q |
| |
|
| |||||| |||| | |||||||||||||||||| |
|
|
| T |
28781582 |
aaaaataattaaataattgtttaaaaacgtaaat |
28781549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 27592628 - 27592799
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||| ||| | ||| |||||||||||||||||||||| ||||| |
|
|
| T |
27592628 |
tattcatgtgcaataagataagttagtgt----ctaacaacatcacaatcacatccatgt--actaagaatgtattatacatttctaactatttcgacat |
27592721 |
T |
|
| Q |
118 |
ataaataactaa---aacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattattg |
195 |
Q |
| |
|
|||||||||||| |||||||||||| ||| || ||||||||||| || | ||||||||| || |||||||||||| |
|
|
| T |
27592722 |
ataaataactaatagtacttgtttaaaactgtatataaaaaaggtatt---tcccttttaacctttaagatgagattattg |
27592799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 27679525 - 27679354
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||| ||| | ||| |||||||||||||||||||||| ||||| |
|
|
| T |
27679525 |
tattcatgtgcaataagataagttagtgt----ctaacaacatcacaatcacatccatgt--actaagaatgtattatacatttctaactatttcgacat |
27679432 |
T |
|
| Q |
118 |
ataaataactaa---aacttgtttaaaaacgtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattattg |
195 |
Q |
| |
|
|||||||||||| |||||||||||| ||| || ||||||||||| || | ||||||||| || |||||||||||| |
|
|
| T |
27679431 |
ataaataactaatagtacttgtttaaaactgtatataaaaaaggtatt---tcccttttaacctttaagatgagattattg |
27679354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 27677227 - 27677408
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||| |||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
27677227 |
tattcatgtgcaataagataagttagtgtctaa----caacatcacaatcacatccatgtact-----aatgtattatacatttctaactatttcgacat |
27677317 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaac-gtaaatgaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattga |
210 |
Q |
| |
|
|||||||||||| | | ||| ||||| ||| || ||||||||||| || | ||||||||| || |||||||||||| | ||||||| |||| |
|
|
| T |
27677318 |
ataaataactaatagtacttttaaaactgtatataaaaaaggtatt---tcccttttaacctttaagatgagattattgtgaaattgaagttga |
27677408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 27706011 - 27706153
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||| ||| | ||| |||||| ||||||||||||||| ||||| |
|
|
| T |
27706011 |
tattcatgtgcaataagataagttagtgt----ctaacaacatcccaatcacatccatgt--actaagaatgtattattcatttctaactatttcgacat |
27706104 |
T |
|
| Q |
118 |
ataaataactaa---aacttgtttaaaaacgtaaatgaaaaaggtattt |
163 |
Q |
| |
|
|||||||||||| |||||||||||| ||| || |||||||||||| |
|
|
| T |
27706105 |
ataaataactaatagtacttgtttaaaactgtatataaaaaaggtattt |
27706153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 27698224 - 27698298
Alignment:
| Q |
53 |
aacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacatataaataactaa |
129 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
27698224 |
aacaacatcacaatcacatctatgtac--tcagaatatattataaatttctaactatttcgacatataaataactaa |
27698298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26646990 - 26646932
Alignment:
| Q |
86 |
aatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaac |
144 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| | | |||||||||||||| |
|
|
| T |
26646990 |
aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac |
26646932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26752958 - 26752900
Alignment:
| Q |
86 |
aatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaac |
144 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| | | |||||||||||||| |
|
|
| T |
26752958 |
aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac |
26752900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 26143379 - 26143322
Alignment:
| Q |
86 |
aatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaa |
143 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||| | |||||||| |||| |
|
|
| T |
26143379 |
aatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaa |
26143322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 25539118 - 25538997
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | || |||| ||||| ||||||||| | | |||||||||| || |||||| | ||||||||| |
|
|
| T |
25539118 |
tattcatgtccaataagataagttagaacataa--actaaaatcaaaatcacatccatgtat--tgagaatatattatgcaattctaatttttttgacat |
25539023 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaa |
143 |
Q |
| |
|
|||||||||| | |||||||| |||| |
|
|
| T |
25539022 |
ataaataacttacacttgttttaaaa |
25538997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 25483570 - 25483512
Alignment:
| Q |
86 |
aatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaac |
144 |
Q |
| |
|
||||||| || || |||||||| ||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
25483570 |
aatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac |
25483512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26056433 - 26056375
Alignment:
| Q |
86 |
aatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaac |
144 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||| | ||| |||| ||||| |
|
|
| T |
26056433 |
aatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac |
26056375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 26076403 - 26076345
Alignment:
| Q |
86 |
aatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaac |
144 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||| | ||| |||| ||||| |
|
|
| T |
26076403 |
aatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac |
26076345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 27610727 - 27610782
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgt |
77 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
27610727 |
tattcatgcccaataagataagttagtatg----tgacaacatcacaatcacatccatgt |
27610782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 27530908 - 27530936
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtat |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27530908 |
tattcatgtccaataagataagttagtat |
27530936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 60144 - 60007
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| || |||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
60144 |
tattcatgtccaataatataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacat |
60049 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
60048 |
ataaataactaacaattgtttaaaaacataaataaaaaaggt |
60007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 18074336 - 18074199
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| || |||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
18074336 |
tattcatgtccaataatataagttagtatgtaac-aacatca-cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacat |
18074241 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
18074240 |
ataaataactaacaattgtttaaaaacataaataaaaaaggt |
18074199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 18723688 - 18723819
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||| ||| ||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
18723688 |
tattcatgtccaataagataagtcagtatgtaa----caacatcacagtcacatccatttac--tcataatatatcatacatttctaactattttgactt |
18723781 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaa |
155 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
18723782 |
ataaataactaatacttgtttaaaaatgtaaataaaaa |
18723819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 18731107 - 18731232
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||||| | ||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
18731107 |
tattcatgtccaataagataagtcagtatgtaa----caacatcacagtcacatccatgtcc--tcataatatatcatacatttctaactattttgactt |
18731200 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaa |
149 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |
|
|
| T |
18731201 |
ataaataactaatacttgtttaaaaatgtaaa |
18731232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 18655080 - 18655211
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||||||||||||||| | ||| || ||||||||||||| ||| |||||| | ||||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
18655080 |
tattcatgtccaataagataaatcagtgtg----taacaacatcacagtcacatccattt--actcataatatatcatacatttctaactattttgactt |
18655173 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaaatgaaaa |
155 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
18655174 |
ataaataactaatacttgtttaaaaatgtaaataaaaa |
18655211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 18699003 - 18699127
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
||||||||||||||||||||| | ||| || ||||||||||||| ||| |||||||| |||| | ||||| |||||||||||||||||||||| | |
|
|
| T |
18699003 |
tattcatgtccaataagataaatcagtgtg----taacaacatcacagtcacatccatgt--cctcatagtatatcatacatttctaactattttgactt |
18699096 |
T |
|
| Q |
118 |
ataaataactaaaacttgtttaaaaacgtaa |
148 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
18699097 |
ataaataactaatacttgtttaaaaacgtaa |
18699127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 18679163 - 18679301
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaa-------ctatt |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||| | |||||||| ||| ||||||| |||||||||||| ||||| |
|
|
| T |
18679163 |
tattcatgtccaataagataagtcagtatgtaa----caacatcacagtcacacccatgtac--tcataatatatcatacatttctaaattcaaactatt |
18679256 |
T |
|
| Q |
111 |
ttgacatataaataactaaaacttgtttaaaaacgtaaatgaaaa |
155 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
18679257 |
ttgacttataaataactaatacttgtttaaaaacgtaaataaaaa |
18679301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 8062 - 7935
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
8062 |
tattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacat |
7969 |
T |
|
| Q |
118 |
ataaataactaaa-acttgtttaaaaacgtaaat |
150 |
Q |
| |
|
| || ||| |||| |||||||||||||||||||| |
|
|
| T |
7968 |
aaaagtaattaaatacttgtttaaaaacgtaaat |
7935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 13282 - 13409
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
13282 |
tattcatgtcatataagataagttagtatgtaa----caacatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacat |
13375 |
T |
|
| Q |
118 |
ataaataactaaa-acttgtttaaaaacgtaaat |
150 |
Q |
| |
|
| || ||| |||| |||||||||||||||||||| |
|
|
| T |
13376 |
aaaagtaattaaatacttgtttaaaaacgtaaat |
13409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 4319 - 4457
Alignment:
| Q |
18 |
tattcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgtacactcaaaatatattatacatttctaactattttgacat |
117 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||| | || |||| |||||||||||||||||| |||||| |
|
|
| T |
4319 |
tattaatgtccgataagataagttagtatgtaa----caacatcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacat |
4414 |
T |
|
| Q |
118 |
ataaataactaaa-acttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
| || ||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
4415 |
aaaagtaattaaatacttgtttaaaaacgtaaatataaaaggt |
4457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 268015 - 268094
Alignment:
| Q |
80 |
actcaaaatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaacgtaaatgaaaaaggt |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | |||||||| |||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
268015 |
actcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaaacgtaaataaaaaaggt |
268094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 28127332 - 28127397
Alignment:
| Q |
85 |
aaatatattatacatttctaactattttgacatataaataactaaaacttgtttaaaaacgtaaat |
150 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||| || | |||||||||||||| ||||| |
|
|
| T |
28127332 |
aaatacattatacaactctgactattttgacatataaataccttatacttgtttaaaaacataaat |
28127397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 28164048 - 28164097
Alignment:
| Q |
101 |
tctaactattttgacatataaataactaaaacttgtttaaaaacgtaaat |
150 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||| ||||| |
|
|
| T |
28164048 |
tctaactattttgacatataaatatcttatacttgtttaaaaacataaat |
28164097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 14082 - 14135
Alignment:
| Q |
20 |
ttcatgtccaataagataagttagtatgtaattaacaacatcacaatcaaatccatgt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
14082 |
ttcatgtccaataagataagttagtatg----tgacaacatcacaatcacatccatgt |
14135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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