View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092_low_12 (Length: 305)
Name: NF5092_low_12
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8652814 - 8652520
Alignment:
| Q |
1 |
ccacctaactttctagttaccattgccaccttcaacacaannnnnnnncctaatcacaaagctcactgcatgaccaaaatttcttgaaacccaattgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8652814 |
ccacctaactttctagttaccattgccaccttcaacacaattttttttcctaatcacaaagctcactgcataaccaaaatttcttgaaacccaattgaat |
8652715 |
T |
|
| Q |
101 |
tcataacaaaaatttcaaagttttaacagatcttaatccgattttttgaatcaaactcaagcgnnnnnnnnntccaattttttgaatcaaattcacaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8652714 |
ccataacaaaaatttcaaagttttaacagatcttaatccgattttttgaatcaaactcaagcgaaaaaaaaatccaattttttgaatcaaattcacaagt |
8652615 |
T |
|
| Q |
201 |
gaaaaggtaataagatggtattcccattcataattttttgaatcacactcacaattttttgaatccaaagatacaagtgagcaagtgtgatgatg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |
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| T |
8652614 |
gaaaaggtaataagatggtattcccattcataattttttgaatcacactcacaattttttgaatccaaagatataagtgagtaagtgttatgatg |
8652520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 33148035 - 33147962
Alignment:
| Q |
86 |
gaaacccaattgaattcataacaaaaatttcaa-agttttaacagatcttaatccgattttttgaatcaaactc |
158 |
Q |
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| T |
33148035 |
gaaacccaattgaatccatgataaaaatttcaatacttttaactgacattgatccaattttttgaatcaaactc |
33147962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 39240658 - 39240551
Alignment:
| Q |
51 |
taatcacaaagctcactgcatgaccaaaatttcttgaaacccaattgaattcataacaaaaatttcaaagttttaacagatcttaatccgattttttgaa |
150 |
Q |
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||||||||||| ||| ||| | ||||||| ||| |||||||||||||| |||||||||||||||||| ||| || | ||| | || |||||||||| |
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| T |
39240658 |
taatcacaaagttcatggcagaaacaaaattccttaaaacccaattgaatccataacaaaaatttcaaaactttcccaaaccttgaaccaattttttgaa |
39240559 |
T |
|
| Q |
151 |
tcaaactc |
158 |
Q |
| |
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|||||||| |
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| T |
39240558 |
tcaaactc |
39240551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 23220501 - 23220453
Alignment:
| Q |
224 |
ccattcataattttttgaatcacactcacaattttttgaatccaaagat |
272 |
Q |
| |
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| T |
23220501 |
ccatttataattttttgaatcaaactcacaattgtttgaatccatagat |
23220453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 30669313 - 30669255
Alignment:
| Q |
209 |
aataagatggtattcccattcataattttttgaatcacactcacaattttttgaatcca |
267 |
Q |
| |
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||||||||||| || |||||||||||||||||||||| |||| | | ||||||||||| |
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|
| T |
30669313 |
aataagatggtctttccattcataattttttgaatcaaactcgtagtattttgaatcca |
30669255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 6311114 - 6311223
Alignment:
| Q |
49 |
cctaatcacaaagctcactgcatgaccaaaatttcttgaaacccaattgaattcataacaaaaatttcaa-agttttaacagatcttaatccgatttttt |
147 |
Q |
| |
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||||||||||||| ||| ||| || ||||||| | ||||||||||||||| ||| | ||||||||||| | ||||||| || || |||| ||||||| |
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| T |
6311114 |
cctaatcacaaagttcatggca-gaacaaaattcatcgaaacccaattgaatccatgataaaaatttcaatacttttaactgacattgatccaatttttt |
6311212 |
T |
|
| Q |
148 |
gaatcaaactc |
158 |
Q |
| |
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||||||||||| |
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|
| T |
6311213 |
gaatcaaactc |
6311223 |
T |
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