View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092_low_14 (Length: 299)
Name: NF5092_low_14
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 9200630 - 9200896
Alignment:
| Q |
18 |
tatacaatatacgtatgcatggaaaccggacaaaatatcactgttatgcgtatactggtggcttaattatgnnnnnnngaaaaactggaatacaatcgtt |
117 |
Q |
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| T |
9200630 |
tatacaatatacgtatgcatggaaactggacaaaatatcactgttatgcgtatattggtggcttaattatgttttttttaaaaactggaatacaatcgtt |
9200729 |
T |
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| Q |
118 |
gttatgcgggtacttgtggcttaattatgttgttgatttaccaaaattggagaaagggtatacatggaaatacaacaaaatagcagccatccatcccatt |
217 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||| |
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| T |
9200730 |
gttatgcgcgtacttgtggcttaattatgttgttaatttaccaaaattggagaaagggtatacatgaaaatacaacaaaataacaaccatccattccatt |
9200829 |
T |
|
| Q |
218 |
tcttcccacaagagagaagattgcaaaaagttatgggacccacaatatttggatctctctcccctat |
284 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |
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| T |
9200830 |
tcttcccacaagagagaagattgcaaaaagttgtgggacccacaatatttggatttctcccccctat |
9200896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 44062686 - 44062796
Alignment:
| Q |
174 |
ggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaagagagaagattgcaaaaagttatgggacccacaatatttggatct |
273 |
Q |
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|||||| ||| ||||||||| ||||| | | |||||||| ||||||||| ||| |||||||| |||| |||||||| ||||||||||| || |||||||| |
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| T |
44062686 |
ggtatatatgaaaatacaaccaaatacctggcatccatcacatttcttcacactagagagaacattgtaaaaagttgtgggacccacagtaattggatct |
44062785 |
T |
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| Q |
274 |
ctctcccctat |
284 |
Q |
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| T |
44062786 |
ctctcacctat |
44062796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 27879126 - 27879271
Alignment:
| Q |
133 |
gtggcttaattatgttgttgatttaccaaaattggagaaagggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaagaga |
232 |
Q |
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||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27879126 |
gtggcttaattatgttgttaatttacaaaaagtggacaaagggtatacatggaaatacagcaaaatagcagccatccatcccatttcttcccacaagaga |
27879225 |
T |
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| Q |
233 |
gaagattgcaaaaagttatgggacccacaatatttggatctctctc |
278 |
Q |
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| T |
27879226 |
gaagattgcaaaaagctgtgggacccgcaatatttggatctctctc |
27879271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 133 - 284
Target Start/End: Original strand, 3711958 - 3712109
Alignment:
| Q |
133 |
gtggcttaattatgttgttgatttaccaaaattggagaaagggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaagaga |
232 |
Q |
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||||||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3711958 |
gtggcttaattatgttgttaatttacaaaaagtggacaaatggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaagaga |
3712057 |
T |
|
| Q |
233 |
gaagattgcaaaaagttatgggacccacaatatttggatctctctcccctat |
284 |
Q |
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| T |
3712058 |
gaagattgcaaaaagcagtgggatccgcaatatttggatctctctctcctat |
3712109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 4681952 - 4682085
Alignment:
| Q |
130 |
cttgtggcttaattat-gttgttgatttaccaaaattggagaaagggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaa |
228 |
Q |
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||||| |||||||| | |||||||| ||| |||| || | |||||||||| || |||||||||||||||| || |||||||||||||||| | ||| |
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| T |
4681952 |
cttgttgcttaattttagttgttgagttaaaaaaagtgaacaaagggtatatatagaaatacaacaaaataacatgcatccatcccatttctgtgctcaa |
4682051 |
T |
|
| Q |
229 |
gagagaagattgcaaaaagttatgggacccacaa |
262 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
4682052 |
tagagaagattgcaaaaagttgtgggacccacaa |
4682085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 277
Target Start/End: Complemental strand, 1776883 - 1776776
Alignment:
| Q |
170 |
aaagggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaagagagaagattgcaaaaagttatgggacccacaatatttgg |
269 |
Q |
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||||| |||| ||| ||||||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
1776883 |
aaaggatatatatgaaaatacaacaaaataacatgcatccatcccatttctctgctcaatagagaagattgcaaaaagttgtgggacccacaatttttgt |
1776784 |
T |
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| Q |
270 |
atctctct |
277 |
Q |
| |
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||||||| |
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| T |
1776783 |
gtctctct |
1776776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 37631022 - 37631101
Alignment:
| Q |
205 |
catccatcccatttcttcccacaagagagaagattgcaaaaagttatgggacccacaatatttggatctctctcccctat |
284 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||| |
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| T |
37631022 |
catccattccatttctcaccacaagagagaagattgcaaaaaattatgggacccattaaatttggatctctctctcctat |
37631101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 33646825 - 33646737
Alignment:
| Q |
170 |
aaagggtatacatggaaatacaacaaaatagcagccatccatcccatttcttcccacaagagagaagattgcaaaaagttatgggaccc |
258 |
Q |
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|||||||||| ||| ||||||||||||||| || |||||||||||||||| || ||| |||| ||||||||||||||| |||||||| |
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| T |
33646825 |
aaagggtatatatgaaaatacaacaaaataacatgcatccatcccatttctctcctcaatagaggagattgcaaaaagttgtgggaccc |
33646737 |
T |
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