View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5092_low_2 (Length: 538)

Name: NF5092_low_2
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5092_low_2
NF5092_low_2
[»] chr3 (3 HSPs)
chr3 (35-140)||(37604541-37604646)
chr3 (142-265)||(37604677-37604801)
chr3 (441-521)||(41828799-41828879)
[»] chr1 (4 HSPs)
chr1 (35-140)||(46556347-46556452)
chr1 (142-265)||(46556192-46556316)
chr1 (441-521)||(28237553-28237633)
chr1 (442-521)||(42773093-42773172)
[»] chr5 (3 HSPs)
chr5 (311-388)||(22779848-22779925)
chr5 (441-513)||(29656281-29656353)
chr5 (229-265)||(22779764-22779800)
[»] chr8 (1 HSPs)
chr8 (441-521)||(9374825-9374905)
[»] chr7 (1 HSPs)
chr7 (441-521)||(39445597-39445677)
[»] chr2 (1 HSPs)
chr2 (441-513)||(9059250-9059322)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 37604541 - 37604646
Alignment:
Q  35 aattgcacaaatctgtcgctttaaaaactatatattttgatgttatttgcttgaaagaaaaagcaggagtgttacataataatcagagtaaaattgaaat 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  37604541 aattgcacaaatctgtcactttaaaaactatatattttgatgttatttgcttgaaacaaaaagcagtagtgttacataataaacagagtaaaattgaaat 37604640  T
Q  135 gattag 140  Q
    ||||||    
T  37604641 gattag 37604646  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 37604677 - 37604801
Alignment:
Q  142 aacatatcattgcttccaaaaatttgcataccctcgtaatctagttcttagcataaccaaaaa-ttgattaccaaatgctctctctttaacagtggattt 240  Q
    ||||||||||||||| ||||| ||||||||  ||| |||||||||||||| |||||| ||| | || ||||||||||  | |||||||||||||||||||    
T  37604677 aacatatcattgctttcaaaattttgcatatgctcataatctagttcttaacataactaaagacttaattaccaaatattatctctttaacagtggattt 37604776  T
Q  241 caaaagagttttgaaagacaaactc 265  Q
    ||||| |||||||||||||||||||    
T  37604777 caaaacagttttgaaagacaaactc 37604801  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 521
Target Start/End: Complemental strand, 41828879 - 41828799
Alignment:
Q  441 tacaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgatatgctacc 521  Q
    |||||||||| || |||||| |||||||||||| | ||||||  |||||||||||||||||||||| |||||| |||||||    
T  41828879 tacaaattagtaacaacaattaaaatcaaagaaaaataaatggttcaatttctccaatttaacagcaaatgatctgctacc 41828799  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 46556452 - 46556347
Alignment:
Q  35 aattgcacaaatctgtcgctttaaaaactatatattttgatgttatttgcttgaaagaaaaagcaggagtgttacataataatcagagtaaaattgaaat 134  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  46556452 aattgcacaaatctgtcactttaaaaactatatattttgatgttatttgcttgaaacaaaaagcagtagtgttacataataaacagagtaaaattgaaat 46556353  T
Q  135 gattag 140  Q
    ||||||    
T  46556352 gattag 46556347  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 46556316 - 46556192
Alignment:
Q  142 aacatatcattgcttccaaaaatttgcataccctcgtaatctagttcttagcataaccaaaaa-ttgattaccaaatgctctctctttaacagtggattt 240  Q
    ||||||||||||||| ||||| ||||||||  ||| |||||||||||||| |||||| ||| | || ||||||||||  | |||||||||||||||||||    
T  46556316 aacatatcattgctttcaaaattttgcatatgctcataatctagttcttaacataactaaagacttaattaccaaatattatctctttaacagtggattt 46556217  T
Q  241 caaaagagttttgaaagacaaactc 265  Q
    ||||| |||||||||||||||||||    
T  46556216 caaaacagttttgaaagacaaactc 46556192  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 521
Target Start/End: Original strand, 28237553 - 28237633
Alignment:
Q  441 tacaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgatatgctacc 521  Q
    |||||||||| |||||||||||| ||||||||| | |||| |  |||||||||||||||||||||| |||||| |||||||    
T  28237553 tacaaattagtaagaacaataaatatcaaagaaaaataaacggttcaatttctccaatttaacagcaaatgatctgctacc 28237633  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 521
Target Start/End: Complemental strand, 42773172 - 42773093
Alignment:
Q  442 acaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgatatgctacc 521  Q
    ||||||||| || |||||| |||||||||||| | |||| |  |||||||||||||||||||||| |||||| |||||||    
T  42773172 acaaattagtaacaacaattaaaatcaaagaaaaataaacggttcaatttctccaatttaacagcaaatgatctgctacc 42773093  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 22779848 - 22779925
Alignment:
Q  311 tgttgatatacaaatctaaacatgtttatcttaaatacccaaagaaacaaacatgtttttagaaaaacaacccaaaaa 388  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||    
T  22779848 tgttgatatacaaatctaaacatgtttatcttaaatatccaaaaaaacaaacctgtttttggaaacacaacccaaaaa 22779925  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 513
Target Start/End: Original strand, 29656281 - 29656353
Alignment:
Q  441 tacaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgat 513  Q
    |||||||||| |||||| ||||||||||||||| | |||| |  |||||||||||||||||||||| ||||||    
T  29656281 tacaaattagtaagaacgataaaaatcaaagaaaaataaacggttcaatttctccaatttaacagcaaatgat 29656353  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 22779764 - 22779800
Alignment:
Q  229 aacagtggatttcaaaagagttttgaaagacaaactc 265  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22779764 aacagtggatttcaaaacagttttgaaagacaaactc 22779800  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 441 - 521
Target Start/End: Original strand, 9374825 - 9374905
Alignment:
Q  441 tacaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgatatgctacc 521  Q
    |||||||||| |||||||||||||||||||||| | |||| |  |||||||||||||||||||||| |||||| |||||||    
T  9374825 tacaaattagtaagaacaataaaaatcaaagaaaaataaacggttcaatttctccaatttaacagcaaatgatctgctacc 9374905  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 521
Target Start/End: Complemental strand, 39445677 - 39445597
Alignment:
Q  441 tacaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgatatgctacc 521  Q
    |||||||||| |||||| ||||||||||||||| | |||| || ||||||||||||||| |||||| |||||| |||||||    
T  39445677 tacaaattagtaagaacgataaaaatcaaagaaaaataaacgattcaatttctccaattgaacagcaaatgatctgctacc 39445597  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 513
Target Start/End: Original strand, 9059250 - 9059322
Alignment:
Q  441 tacaaattagcaagaacaataaaaatcaaagaagagtaaatgaatcaatttctccaatttaacagcgaatgat 513  Q
    |||||||||| |||||||||||||||||||||| |||||| |  |||||||||||||||||| ||| ||||||    
T  9059250 tacaaattagtaagaacaataaaaatcaaagaaaagtaaacggttcaatttctccaatttaagagcaaatgat 9059322  T

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