View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092_low_20 (Length: 219)
Name: NF5092_low_20
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 45012461 - 45012285
Alignment:
| Q |
27 |
cacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcattccact |
126 |
Q |
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| T |
45012461 |
cacagtgcaccaaataccacagcattccagcagtaatattctctacggcaggatacactggaaaccatttccatgaattcagtgacattgtcattccact |
45012362 |
T |
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| Q |
127 |
gtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaac |
203 |
Q |
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| T |
45012361 |
gtttttgacttgtagacaatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaac |
45012285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 45018654 - 45018761
Alignment:
| Q |
22 |
agttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcatt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45018654 |
agttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcatt |
45018753 |
T |
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| Q |
122 |
ccactgtt |
129 |
Q |
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| T |
45018754 |
ccactgtt |
45018761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 3173006 - 3172830
Alignment:
| Q |
27 |
cacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcattccact |
126 |
Q |
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||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
3173006 |
cacagtgcaccaaatatcacagcattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgatattgtcattccact |
3172907 |
T |
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| Q |
127 |
gtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaac |
203 |
Q |
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||||||||| || ||| ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
3172906 |
gtttttgacttgtagactatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaac |
3172830 |
T |
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