View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5092_low_4 (Length: 446)
Name: NF5092_low_4
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_low_4 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 15658299 - 15658720
Alignment:
| Q |
19 |
aacaaagcacaatcaatggtgtgtggaaggaggaccaa---gaaaatgcttgtaaggctattgctctcnnnnnnn-acaataatgctattccgtttaatg |
114 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
15658299 |
aacaaagcacaatcaatggtgtgtggaagaaggagcaccgggaaaatgcttgtaaggctattgctctcttttttttacaataatgctatttcgtttaatg |
15658398 |
T |
|
| Q |
115 |
ttgcaaggtctgatgaatattttaagatgtttgaacttgttgcaaagcatggtataggatttaagccaccctcttatgatgagattagaaataaatattt |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15658399 |
ttgcaaggtctgatgaatatcttaagatgtttgaacttgttgcaaagcatggtataggatttaagccactctcttatgatgagattagaaataaatattt |
15658498 |
T |
|
| Q |
215 |
gaattatttttatggtgaaattggtaaggatttggcagcacacagagctgtttgggagaaatggggttgcacaattatgactgatggttggactgatagg |
314 |
Q |
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| T |
15658499 |
gaattatttttatggtgaaattggtaaggatttggaagcacacagagctgtttgggagaaatgtggttgcataattatgactgatggttggactgataga |
15658598 |
T |
|
| Q |
315 |
aggagaagaactatattgaattttttggtacgtagtccaaagggaacttttattttaaagtctattgatgcatctgacattaccaaaattgctgataaat |
414 |
Q |
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| T |
15658599 |
aggagaagaactatattgaattttttggtacatagtccaaagggaactttttttttaaagtctattgatccatctgacattaccaaaactgctgataaaa |
15658698 |
T |
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| Q |
415 |
tttttaagatgattgatgatgt |
436 |
Q |
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| T |
15658699 |
tttttaagatgattgatgatgt |
15658720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 26 - 436
Target Start/End: Original strand, 244236 - 244657
Alignment:
| Q |
26 |
cacaatcaatggtgtgtggaaggagga---ccaagaaaatgcttgtaaggctattgctctcnnnnnnnacaataatgctattccgtttaatgttgcaagg |
122 |
Q |
| |
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|||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
244236 |
cacaatcaatggtgtgtggaagaaggaagaccgggaagatgcttgtaaggctattgctctctctttttacaataatgttattccatttgatgttgcaagg |
244335 |
T |
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| Q |
123 |
tctgatgaatattttaagatgtttgaacttgttgcaaagcatggtataggatttaagccac--cctcttatgatgagattagaaataaatatttgaatta |
220 |
Q |
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| T |
244336 |
tctgatgagtattttaagatgtttgaatatgttgcaaagcatggtataggatttaagccacaccctcttatcatgagattagagctaaatatttggatta |
244435 |
T |
|
| Q |
221 |
tttttatggtgaaattggtaaggatttggcagcacacagagctgtttgggagaaatggggttgcacaattatgactgatggttggactgataggaggaga |
320 |
Q |
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||| |||||||||||| ||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
244436 |
tttatatggtgaaattagtaaggatttggcaggacatagagctgtttggaagaaatatggttgcacaattatgaccgatggttggactgataggaggaga |
244535 |
T |
|
| Q |
321 |
agaactatattgaattttttggtacgtagtccaaagggaac-----ttttattttaaagtctattgatgcatctgacattaccaaaattgctgataaa-t |
414 |
Q |
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||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||| ||||| | |
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| T |
244536 |
agaactatattgaattttttggtacatagtccaaagggagcttttttttttttttaaagtctattgatgcatctgacattaccaaaactgctaataaatt |
244635 |
T |
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| Q |
415 |
tttttaagatgattgatgatgt |
436 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
244636 |
tttttaagatgattgatgatgt |
244657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 26 - 436
Target Start/End: Complemental strand, 246255 - 245842
Alignment:
| Q |
26 |
cacaatcaatggtgtgtggaaggagga---ccaagaaaatgcttgtaaggctattgctctcnnnnnnnacaataatgctattccgtttaatgttgcaagg |
122 |
Q |
| |
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|||||||||||||||||||||| |||| || ||| |||||||| |||||||||||||| ||||||||| |||||| ||||||| |||||| |
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| T |
246255 |
cacaatcaatggtgtgtggaagaaggaagaccgggaagatgcttgttaggctattgctctccttttttacaataatgttattccatttaatggtgcaagc |
246156 |
T |
|
| Q |
123 |
tctgatgaatattttaagatgtttgaacttgttgcaaagcatggtataggatttaagccaccctcttatgatgagattagaaataaatatttgaattatt |
222 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||| |||||| |
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| T |
246155 |
tctgatgagtattttaagatgtttgaatatgttgcaaagcatggtttaatatttaagccaccctcttatcatgagattagagttaaatatttggattatt |
246056 |
T |
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| Q |
223 |
tttatggtgaaattggtaaggatttggcagcacacagagctgtttgggagaaatggggttgcacaattatgactgatggttggactgataggaggagaag |
322 |
Q |
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| T |
246055 |
tctatggtgaaattagtaaggatttgacaggacatagagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaag |
245956 |
T |
|
| Q |
323 |
aactatattgaattttttggtacgtagtccaaagggaac-ttttattttaaagtctattgatgcatctgacattaccaaaattgctgataaattttttaa |
421 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||| | |||||||| ||||||| |
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| T |
245955 |
aactatattgaactttttggtacatagtccaaagggaacttttttttttaaagtctattga-gcatcttacattaccaaaactcctgataaaatttttaa |
245857 |
T |
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| Q |
422 |
gatgattgatgatgt |
436 |
Q |
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||||||||||||||| |
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| T |
245856 |
gatgattgatgatgt |
245842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 4370465 - 4370419
Alignment:
| Q |
170 |
aggatttaagccaccctcttatgatgagattagaaataaatatttga |
216 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
4370465 |
aggatttaagccaccgtcttatgatgagattagagggaaatatttga |
4370419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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