View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5092_low_5 (Length: 422)
Name: NF5092_low_5
Description: NF5092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5092_low_5 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0004 (1 HSPs) |
| |
|
| [»] scaffold0123 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 5400345 - 5399937
Alignment:
| Q |
18 |
atgaaaatcataaaaatccaaaaacattttcatatcttttttagaacatgaaagaaacaaacaacacactagtaattgtccaatgaccacatgtaaattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400345 |
atgaaaatcataaaaatccaaaaacattttcatatcttttttagaaaatgaaagaaacaaacaacacactagtaattgtccaatgaccacatgtaaattt |
5400246 |
T |
|
| Q |
118 |
tgcaaagccttttcactctgagtaacgctctgtttcatctgaaaaagtgttttaaagttcaacttttaaaatcccaacaaagtgtaacattcctttaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400245 |
tgcaaagccttttcactctgagtaacgctctgtttcatctgaaaaagtgttttaaagttcaacttttaaaatcccaacaaagtgtaacattcctttaatc |
5400146 |
T |
|
| Q |
218 |
ccatcaaaatacgtgcaataacccatacactttctttattgtcgtagtaattgagttctagtagtactactgtattgattgatcattaatagacatgtcc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5400145 |
ccatcaaaatacgtgcaataacccatacactttctttattgtcgttgtaattgagttctagtagtactactgtattgattgatcattaatcgacatgtcc |
5400046 |
T |
|
| Q |
318 |
atatacctaataaacacacgtactcttcggattatatgtgtctcagtatcatatacatatat----acgataccgacacatatagttacattgaattatg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||| || ||||||| ||||||||||||||| |
|
|
| T |
5400045 |
atatacctaataaacacacgtactcttcagattagatgtgtctcagtatcatatatatatatatacacgatactgaaacatataattacattgaattatg |
5399946 |
T |
|
| Q |
414 |
tcatttttt |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
5399945 |
tcatttttt |
5399937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 38749571 - 38749604
Alignment:
| Q |
389 |
acacatatagttacattgaattatgtcatttttt |
422 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
38749571 |
acacatataattacattgaattatgtcatttttt |
38749604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 17168945 - 17168912
Alignment:
| Q |
389 |
acacatatagttacattgaattatgtcatttttt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17168945 |
acacatatagttacattgaattatgtcatttttt |
17168912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 9617494 - 9617454
Alignment:
| Q |
380 |
acgataccgacacatatagttacattgaattatgtcatttt |
420 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
9617494 |
acgacaccgacacatataattacattgaattatgtgatttt |
9617454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 19930940 - 19930980
Alignment:
| Q |
380 |
acgataccgacacatatagttacattgaattatgtcatttt |
420 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
19930940 |
acgatatcgacacatataattacattgaattatgtcatttt |
19930980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 30606069 - 30606105
Alignment:
| Q |
386 |
ccgacacatatagttacattgaattatgtcatttttt |
422 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30606069 |
ccgacacatatggttacattgaattatgtcatttttt |
30606105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 101052 - 101018
Alignment:
| Q |
388 |
gacacatatagttacattgaattatgtcatttttt |
422 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
101052 |
gacacatataattacattgaattatgtcatttttt |
101018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 14692517 - 14692480
Alignment:
| Q |
382 |
gataccgacacatatagttacattgaattatgtcattt |
419 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
14692517 |
gataccgacacctatagttacactgaattatgtcattt |
14692480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 44524 - 44564
Alignment:
| Q |
380 |
acgataccgacacatatagttacattgaattatgtcatttt |
420 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
44524 |
acgataccgacacatataattacactgaattatgtgatttt |
44564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University