View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5092_low_6 (Length: 392)

Name: NF5092_low_6

Description: NF5092

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5092_low_6

[»] chr5 (1 HSPs)

Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 368; E-Value: 0

Query Start/End: Original strand, 1 - 392

Target Start/End: Original strand, 3544583 - 3544974

Alignment:

Q	1	gtgcatcatttgtaaagaagatatcaaaagcaagaggcatcaagccaagggagtacagagccgtacaagactgcatagaaaacatgggtgacagtttgga	100	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3544583	gtgcatcgtttgtaaagaagatatcaaaagcaagaggcatcaagccaagggagtacagagccgtacaagactgcatagaaaacatgggtgacagtttgga	3544682	T

Q	101	cagtcttagccaatcggttagggagttaggcagtattggtcatgctgttggagaggactttgtgtggcacatgaccaacgtgcagacttgggtcagtgct	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3544683	cagtcttagccaatcggttagggagttaggcagtattggtcatgctgttggagaggactttgtgtggcacatgaccaacgtgcagacttgggtcagtgct	3544782	T

Q	201	gcacttactgatgataacacttgtcttgatggctttgctggtccttccatgaatggaattgttaaggctgccatcaaggacagggttgtcaatgttgctc	300	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3544783	gcacttactgatgataacacttgtcttgatggctttgctggtccttccatgaatggaattgttaaggctgccatcaaggacagggttgtcaatgttgctc	3544882	T

Q	301	aagttaccagcaacacactcgctttggttaatcgctttgcctcaagccatcatactgcagcaactccctaaatcggtctgttgtacttgttc	392	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3544883	aagttaccagcaacacactcgctttggttaatcgctttgcctcaagccatcgaactgcagaaactccttaaatcgttctgttgtacttgttc	3544974	T

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