View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5093-Insertion-2 (Length: 567)

Name: NF5093-Insertion-2
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5093-Insertion-2
NF5093-Insertion-2
[»] chr5 (1 HSPs)
chr5 (104-567)||(531424-531885)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 104 - 567
Target Start/End: Complemental strand, 531885 - 531424
Alignment:
Q  104 gctcttggaatagcaaacttgaagagataaaaa-ttattttttggaaaatgtttctatgaaaaatattgttttgagcgtaaaagtaggagcccttggatg 202  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  531885 gctcttggaatagcaaatttgaagagaaaaaaagttattttttggaaaatgtttctatgaaaaatattgttttgagcgaaaaagtaggagcccatggatg 531786  T
Q  203 cttgattcgagaaataagttggtagatagttacaaaccaatgggnnnnnnnnctcattagaatctacaatctcataaattttgtatgaccaaaagttagg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||||||||||| |||||||||    
T  531785 cttgattcgagaaataagttggtagatagttacaaaccaatgggaaaaaaat-tcattagaatttacaatctcataaattttgtatgaccgaaagttagg 531687  T
Q  303 atacgataaacatgaactattgatcaaaactaagaagctcattctttagttttgagaaacttttaccataggacctcatttaaggatgaactctttggct 402  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | |||    
T  531686 atacgataaacataaactattgatcaaaactaagaagctcattctttagttttgagaaacttttaccataggacatcatttaaggatgaactc--tagct 531589  T
Q  403 tgggaaacattttagatctgaatacattgatagatnnnnnnnnnnnnnnnnnnnnnncacatctccaaatcccggctctaaaaactaattttaaaactca 502  Q
    |||||||||||||||||||||||||||| ||||||                      ||||||||||||||||||||||||||||||||||||||| |||    
T  531588 tgggaaacattttagatctgaatacattcatagataaaagaaagaaaagaaaaaaaacacatctccaaatcccggctctaaaaactaattttaaaattca 531489  T
Q  503 ctcaaccggcctaaacttacaaagaaacacataaagagtcaaaatttgatccatcgtacattgtc 567  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  531488 ctcagccggcctaaacatacaaagaaacacataaagagtcaaaatttgatccattgtacattgtc 531424  T

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