View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5093-Insertion-3 (Length: 390)
Name: NF5093-Insertion-3
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093-Insertion-3 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Complemental strand, 26030617 - 26030232
Alignment:
| Q |
7 |
aatgtcatctttttattgaagccccaacatctgaccaaacatgattctgccagaaatcattgcattccaaacgcgccctgtcaaacatataacagaaaaa |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26030617 |
aatgtcatctttttattgaagccccaacgtctgaccaaacatgattctgccagaaatcattgcattccaaacgcgcactgtcaaacatataacagaaaaa |
26030518 |
T |
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| Q |
107 |
gtcattcaaagtctataaatttactaccaacaagactaaaaataaaaatctacaaacacctaaactatctactatattgagatacaaaaaattaca--gt |
204 |
Q |
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| T |
26030517 |
gtcattcaaagtctacaaatttactaccaacgagactaaaaataaaaatctacaaacacctaaactatctactatattgagatacaaaaaattacaaagt |
26030418 |
T |
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| Q |
205 |
cgtataatttcaatcagtagatataatcaggttttacaaatcaaaatatatagcattatataataatttgaatatgctaagttatctaataaccaagacc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26030417 |
tgtataatttcaatcagtagatataatcaggttttacaaatcaaaatatatagcattatataataatttgaatatgctaagttatctaataaccaagacc |
26030318 |
T |
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| Q |
305 |
aagcaagtcgagaatgtcagcaacatataacagattattagcgcttatatcttttagctttgtctgcataccgaaattacattcac |
390 |
Q |
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| T |
26030317 |
aagcaagtcgagaatgtcagcaacatataacagattattagcgcttatatcttttagctttgtctgcataccgaaattacattcac |
26030232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 26035837 - 26035493
Alignment:
| Q |
17 |
ttttattgaagccccaa-catctgaccaaacatgattctgccag------aaatcattgcattccaaacgcgccctgt-----caaacatataacagaaa |
104 |
Q |
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| T |
26035837 |
ttttaatgaagtcccaagcatctgacaaaacatgattctgccagcttcagaaatcattgcactccaaacacgcactgcactgccaaacatatactagaaa |
26035738 |
T |
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| Q |
105 |
aagtcattcaaagtctataaa-tttactaccaacaagact-aaaaataaaaatctacaaacacctaaactatctactatattgagatacaaaaaattac- |
201 |
Q |
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|||| |||||||| || |||| |||||| ||||||||||| |||||| | ||||| |||| ||||||||||||| ||||| ||||||| |||||||||| |
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| T |
26035737 |
aagttattcaaagcctgtaaaatttactgccaacaagactgaaaaattagaatctgcaaatacctaaactatctgctataatgagatataaaaaattacc |
26035638 |
T |
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| Q |
202 |
-agtcgtataatttcaatcagtagatataatcaggttttacaaatcaaaatatatagca---ttatataataatttgaatatgctaagttatctaataac |
297 |
Q |
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| T |
26035637 |
aagtcacataatttcaatctatagacataatgaggttttccaaatcaaaacatatagcattattatataataatctgattctgttaagatatctaataac |
26035538 |
T |
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| Q |
298 |
caagaccaagcaagtcgagaatgtcagcaacatataacagattat |
342 |
Q |
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| T |
26035537 |
caagatcaatcaagtcaaaaatggtagcagcacatagcagattat |
26035493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 24538912 - 24539076
Alignment:
| Q |
57 |
cagaaatcattgcattccaaacgcgccctgtcaaacatataacagaaaaagtcattcaaagtctat-aaatttactaccaacaagac--taaaaataaaa |
153 |
Q |
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|||||||||||||| ||||||||||| ||| |||||||||| |||||||||| |||||||| |||| ||||||||| ||| ||||| |||||| || | |
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| T |
24538912 |
cagaaatcattgcactccaaacgcgcactgccaaacatatagcagaaaaagttattcaaagcctataaaatttactttcaagaagactataaaaagaaga |
24539011 |
T |
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| Q |
154 |
atctacaaacacctaaactatctactatattgagatacaaaaaattac--agtcgtataatttca |
216 |
Q |
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| T |
24539012 |
atcttcaaatacctaaactatctgctaagatgagatacagaaaataaccaagtcgcataatttca |
24539076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 20509297 - 20509171
Alignment:
| Q |
227 |
ataatcaggttttacaaatcaaaatatatagcattata---taataatttgaatatgctaagttatctaataaccaagaccaagcaagtcgagaatgtca |
323 |
Q |
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||||||||| ||||||| ||| || |||||| |||||| ||||||||| ||| || ||||||||||||| |||||| | |||||||| |||| || |
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| T |
20509297 |
ataatcaggatttacaactcataacatatagtattatacaataataatttaaatctgtcaagttatctaatagccaagaaaaggcaagtcgtaaatggca |
20509198 |
T |
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| Q |
324 |
gcaacatataacagattattagcgctt |
350 |
Q |
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||| |||| ||||||||||||| |||| |
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| T |
20509197 |
gcagcatacaacagattattagagctt |
20509171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 25028487 - 25028601
Alignment:
| Q |
227 |
ataatcaggttttacaaatcaaaatatatagcattatataa---taatttgaatatgctaagttatctaataaccaagaccaagcaagtcgagaatgtca |
323 |
Q |
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||||||||||||||||| ||| || |||||| || |||||| |||||||||| | ||||||||||| |||||||| | |||||||||||||| || |
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| T |
25028487 |
ataatcaggttttacaactcataacatatagaatcatataataataatttgaatttttcaagttatctaacaaccaagaaaaggcaagtcgagaatggca |
25028586 |
T |
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| Q |
324 |
gcaacatataacaga |
338 |
Q |
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||| || |||||||| |
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| T |
25028587 |
gcatcaaataacaga |
25028601 |
T |
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