View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5093-Insertion-4 (Length: 370)
Name: NF5093-Insertion-4
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 28128915 - 28128605
Alignment:
| Q |
11 |
ctcgtcatcattagaaacctttgaaagtgaatcaacattattgagaagaacagaaagattggaatcgagactttcaacgagatggagtttacaagaatga |
110 |
Q |
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| T |
28128915 |
ctcgtcatcattagaaacctttgaaagcgaatagacattatggagaagaacagaaagattggaaccgagactttcaacaagatggagtttacaagaatga |
28128816 |
T |
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| Q |
111 |
ggtaagcaagcttaaccacgaaccaaagaataaacacggtcgaacgaaacacctgttatgaaaaaggagagaaaataaacaattaatagaatagtcccac |
210 |
Q |
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| T |
28128815 |
ggtaagcaagcttaaacgcgaaccaaaggttaaacactgtcgaatgaaacacctgttatgaaaaaggagagaaaataaacaattaatagaatagtcccac |
28128716 |
T |
|
| Q |
211 |
accgggtggttttggaaacagagaaaatatactagtttataagagcaacgagtgacggtaagagattagcatgcattaatggatacttcatggtgtaagt |
310 |
Q |
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| T |
28128715 |
accgggtggttttggaaacagagaaaagatacaagtctataaaagcaacgagtgacggtaagggattagcattcattagaggatacttcatggtgtaatt |
28128616 |
T |
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| Q |
311 |
aaacatcgaag |
321 |
Q |
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| T |
28128615 |
aaacatcgaag |
28128605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 20026645 - 20026781
Alignment:
| Q |
18 |
tcattagaaacctttgaaagtgaatcaacattattgagaagaacagaaagattggaatcgagactttcaacgagatggagtttacaagaatgaggtaagc |
117 |
Q |
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|||||||||||| ||||||| |||||||||||| |||||||||| ||||| ||| ||||||||||| || | ||||||||| |||||| |||| |
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| T |
20026645 |
tcattagaaacccttgaaagcgaatcaacattaggaagaagaacagcgagattagaacgaagactttcaacaaggttgagtttacatgaatgatgtaaag |
20026744 |
T |
|
| Q |
118 |
aagcttaaccacgaaccaaagaataaacacggtcgaa |
154 |
Q |
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| T |
20026745 |
aagagtaaccgcgaaccaaagagtaaacacggtcgaa |
20026781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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