View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5093_high_1 (Length: 479)
Name: NF5093_high_1
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093_high_1 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold1333 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 118 - 479
Target Start/End: Original strand, 6241223 - 6241571
Alignment:
| Q |
118 |
ctctattttaaatcatatcttatgtttttcagtacagaatattttacatcatatctaataattactttatgtatacatcataaaaaatttttaacaatgt |
217 |
Q |
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| T |
6241223 |
ctctattttaaatcatatcttatgtttttcagtacaaaatattttacatcatatctaataattact----gtata--------------tgtaacaatgt |
6241304 |
T |
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| Q |
218 |
aggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatataagtcaaacggtgcaatatcttatttccttgtctacatcttagag |
317 |
Q |
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| T |
6241305 |
aggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatacaagtcaaacggtgcaatatcttatttccttgtctacatcttagag |
6241404 |
T |
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| Q |
318 |
actcatttttatt------acatataaaagatgacgcgcttttgcggtttaatacgtttgaaacccttctatagaacaaagttatcttgtaagtggatac |
411 |
Q |
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| T |
6241405 |
actcatttttatttttattacatataaa-gatgacgcgcttttgcggtttaatacgtttgaaacccttctattgaacaaagttatcttgtaagtggatac |
6241503 |
T |
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| Q |
412 |
ttgagacttgtaaagttgttttctttctttttaaaagttagtctatatcacaggcaaaactatcacct |
479 |
Q |
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| T |
6241504 |
ttgagacttgtaaagttgttttttttctttttaaaaattagtctctatcacaggcaaaactatcacct |
6241571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 123 - 479
Target Start/End: Original strand, 6212301 - 6212644
Alignment:
| Q |
123 |
ttttaaatcatatcttatgtttttcagtacagaatattttacatcatatctaataattactttatgtatacatcataaaaaatttttaacaatgtaggac |
222 |
Q |
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| T |
6212301 |
ttttaaatcatatctaatgtttttcattacaaaatattttacatcatatctaataattact----gtata--------------tgtaacaatgtaggac |
6212382 |
T |
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| Q |
223 |
taccctaatattagccatgtatatatgtgtaaactcaaatggtggaatata----agtcaaacggtgcaatatcttatttccttgtctacat--cttaga |
316 |
Q |
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| T |
6212383 |
taccctaatattagccatgtatatatgtgtaa-ctcaaatggtggaatatatataagtcaaacggtgcaatatcttatttccttgtctacatatcttaga |
6212481 |
T |
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| Q |
317 |
gactcatttttattacatataaaagatgacgcgcttttgcggtttaatacgtttgaaacccttctatagaacaaagttatcttgtaagtggatacttgag |
416 |
Q |
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| T |
6212482 |
gactcatttttattacatataaaagatgacgcgcttttgcggtttaatacgttttaaacccttctatagaacaaagttatcttgtaagtggatacttgag |
6212581 |
T |
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| Q |
417 |
acttgtaaagttgttttctttctttttaaaagttagtctatatcacaggcaaaactatcacct |
479 |
Q |
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| T |
6212582 |
acttgtaaagttgttttttttctttttaaaaattagtctttatcacaggcaaaactatcacct |
6212644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 201 - 250
Alignment:
| Q |
332 |
catataaaagatgacgcgcttttgcggtttaatacgtttgaaacccttct |
381 |
Q |
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| T |
201 |
catataaaagatgacatgcttttggggtttaatacgttcgaaaccattct |
250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 96 - 148
Alignment:
| Q |
207 |
tttaacaatgtaggactaccctaatattagccatgtatatatgtgtaaactca |
259 |
Q |
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| T |
96 |
tttaacaatgtaaaactagccaaatattagccatgtatgtgtgtgtaaactca |
148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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