View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5093_low_4 (Length: 419)
Name: NF5093_low_4
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 27 - 368
Target Start/End: Original strand, 13651344 - 13651688
Alignment:
| Q |
27 |
acaaacactataaaatgctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgtagaaaaatggaaacaccgcatgtgttaatc |
126 |
Q |
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| T |
13651344 |
acaaacactataaaaagctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgttgaaaaatggaaacaccgcatgtgttaatc |
13651443 |
T |
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| Q |
127 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgagtaca |
226 |
Q |
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| T |
13651444 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaataca |
13651543 |
T |
|
| Q |
227 |
tccacaacagactcattaatttgaa---tgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattttcaaaataa |
323 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651544 |
tccacaacagactcattagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattttcaaaataa |
13651643 |
T |
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| Q |
324 |
ggagaagcatcctggatttggagaaaacattgtagatgtaatttc |
368 |
Q |
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| T |
13651644 |
ggagaagcatcctggatttggagaaaacattgtagatgtaatttc |
13651688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 115 - 350
Target Start/End: Original strand, 13656680 - 13656915
Alignment:
| Q |
115 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
214 |
Q |
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| T |
13656680 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcacttttctca |
13656779 |
T |
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| Q |
215 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattt |
314 |
Q |
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| T |
13656780 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagaccatctctgattt |
13656879 |
T |
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| Q |
315 |
tcaaaataaggagaagcatcctggatttggagaaaa |
350 |
Q |
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| T |
13656880 |
tcacagtgaggagaaacatcctggatttggagaaaa |
13656915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 115 - 349
Target Start/End: Original strand, 13646354 - 13646588
Alignment:
| Q |
115 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | |||| || ||||| | |
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| T |
13646354 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctca |
13646453 |
T |
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| Q |
215 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattt |
314 |
Q |
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| T |
13646454 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattt |
13646553 |
T |
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| Q |
315 |
tcaaaataaggagaagcatcctggatttggagaaa |
349 |
Q |
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||| | | | ||||||||||||||||||||||||| |
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| T |
13646554 |
tcatagtgaagagaagcatcctggatttggagaaa |
13646588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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