View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5093_low_5 (Length: 392)
Name: NF5093_low_5
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 532335 - 531975
Alignment:
| Q |
13 |
aaaataactacaattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcaca--gggtcaaaccaaggcctagaccggtga |
110 |
Q |
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| T |
532335 |
aaaataactacaattttaaatttaaataatctcttctttctacttagcttttctaaattttccttttcacacagggtcaaaccaaggcctagaccggtga |
532236 |
T |
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| Q |
111 |
aacaagggttttacgtacaaattttgtgtttgattatataatcgannnnnnnnnnnctttctaagaaaatatatttatcaagcaataaagaagacaaaac |
210 |
Q |
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| T |
532235 |
aacaagggttttacgtacaaattttgtgtttgattatataatcgattttttttt--ctttttaagaaaatatatttatcaagcaataaagaagacaaaac |
532138 |
T |
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| Q |
211 |
caatatgtagtgattgaaatgtttagtagtttgtctttaagacactttcactcgctctaaggtttaaattttcgtaatggaaatataatcgtatatgttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
532137 |
caatatgtagtgattgaaatgtttagtagtttgtctttaagacactttcactcgctctaaggtttaaattttcgtaatggaaatataattgtatatgttg |
532038 |
T |
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| Q |
311 |
gtagacaaattgtctctttactcatacccaattgagaaaattttgtttgggtctcagcctatt |
373 |
Q |
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| T |
532037 |
gtagacaaattgtctctttactcatacccaattgagaaaattttgtttgggtctcagcctatt |
531975 |
T |
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