View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5093_low_7 (Length: 276)
Name: NF5093_low_7
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 44627961 - 44627711
Alignment:
| Q |
15 |
aatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44627961 |
aatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaag |
44627862 |
T |
|
| Q |
115 |
ttaaaaaaggcacttacaaagagtagtttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaagga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
44627861 |
ttaaaaaaggcacttacaaagagtagtttttgaatcagggcgttgcacgtgtagaagaggatcctctcttccggcgctccttctctccttgcttgaagga |
44627762 |
T |
|
| Q |
215 |
cttcttgtttttctttagaagcttgaaaagatctttgataaccaagttcat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44627761 |
cttcttgtttttctttagaagcttgaaaagatctttgataaccaagttcat |
44627711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 264
Target Start/End: Complemental strand, 26080955 - 26080833
Alignment:
| Q |
142 |
ttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaa |
241 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26080955 |
ttttgaatcagaacattgtacgcgtagaagaggatcctttctccctgtgttctttctctccttgcttgaaggacttcttgtttttctttagaagcttgga |
26080856 |
T |
|
| Q |
242 |
aagatctttgataaccaagttca |
264 |
Q |
| |
|
||| ||||| | ||||||||||| |
|
|
| T |
26080855 |
aaggtctttcaaaaccaagttca |
26080833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 2850786 - 2850876
Alignment:
| Q |
61 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
151 |
Q |
| |
|
||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||| |
|
|
| T |
2850786 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2850876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 2902818 - 2902908
Alignment:
| Q |
61 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
151 |
Q |
| |
|
||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||| |
|
|
| T |
2902818 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2902908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University