View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5093_low_9 (Length: 246)
Name: NF5093_low_9
Description: NF5093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5093_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 36842035 - 36842190
Alignment:
| Q |
17 |
atacataagtctcaaggaatatcttcccagcttgtgagagcatgtgtgtttacttgtcctgctttgaggtcaagatcaagacagccagtcaaacgttaca |
116 |
Q |
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| T |
36842035 |
atacataagtctcaaggaatatcttcccagcttgtgagagcatgtgtgtttacttgtcctgctttgaggtcaagatcaagacagccagtcaaatgttaca |
36842134 |
T |
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| Q |
117 |
gaaaacttcttgctgatatttttccaaaatctccggttcatgtgttatcatacctt |
172 |
Q |
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| T |
36842135 |
gaaaacttcttgctgatatttttccaaaatccccggttcatgtgttatcatacctt |
36842190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 37514055 - 37513910
Alignment:
| Q |
26 |
tctcaaggaatatcttcccagcttgtgagagcatgtgtgtttacttgtcctgctttgaggtcaagatcaagacagccagtcaaacgttacagaaaacttc |
125 |
Q |
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| T |
37514055 |
tctcaaggaagatcttcccagcttgtgagagcatgtgtgtttgct-gtcctgctttgaggtcaagatcaagacaaccagtcaaacgttacagaaaacttc |
37513957 |
T |
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| Q |
126 |
ttgctgatatttttccaaaatctccggttcatgtgttatcatacctt |
172 |
Q |
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| T |
37513956 |
ttgctgatatctttccaaaatccccggttcgtgtgttatcatacctt |
37513910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 36842231 - 36842296
Alignment:
| Q |
173 |
ggagtaattgaatgtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtctgtgct |
238 |
Q |
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| T |
36842231 |
ggagtaattgaatgtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtttgtgct |
36842296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 37513869 - 37513804
Alignment:
| Q |
173 |
ggagtaattgaatgtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtctgtgct |
238 |
Q |
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| T |
37513869 |
ggagtaattgaatgtaaccttgtgtgtcggatatcggacatgcattcgatttgaaatgtttgtgct |
37513804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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