View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5094-Insertion-1 (Length: 1259)
Name: NF5094-Insertion-1
Description: NF5094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5094-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 489
Target Start/End: Original strand, 27163057 - 27163540
Alignment:
| Q |
8 |
ggttggagttagttaaaagataatccgagttcgagtaagttggccgctcaacatgcaatcccactatcttggaatgtcctttagctaactctaacaaagt |
107 |
Q |
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| T |
27163057 |
ggttggagttagttaaaagataatccgagttcgagtaagttggccgctcaacatgcaatcccactatcttggaatgtcctttagctaactctaacaaagt |
27163156 |
T |
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| Q |
108 |
agagaacctttataagttgatatttgttcacaaaatttcctcgtattttctgtgtagaaattgcagcatacggtgatcattttcgttggtccattgtgat |
207 |
Q |
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| T |
27163157 |
agagaacctttataagttgatatttgttcacaaaatttcctcgtattttccgtgtagaaattgcagcatacggtgatcattttcgttggtccattgtgat |
27163256 |
T |
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| Q |
208 |
tccctgcattttccaaattactagacgtatcttaagagagaagttattctatgccttcactcttttattgtggtttcattcaccatagtatgggttagtt |
307 |
Q |
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| T |
27163257 |
tccctgcattttccaaattactagacgtatcttaagagagaagttattctatgccttcactcttttattgtggtttcattcaccatagtatgggttagtt |
27163356 |
T |
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| Q |
308 |
tgtctgagtgaacataattccaatttttgaatgtttgcataacaagccaatatctagaaaaata--atgttcccatacaagttagagtcgagggatgcag |
405 |
Q |
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| T |
27163357 |
tgtctgagtgaacataattccaatttttgaatgtttgcataacaagccaatatctagaaaaataatatgttcccatacaagttagggtcgagggatgcag |
27163456 |
T |
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| Q |
406 |
tttccttggagtacggttttgtttttaatttggttcgagtgtaccaagtaccaaggtatacttttgctattgtgttattgcatt |
489 |
Q |
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| T |
27163457 |
tttccttggagtacggttttgtttttaatttggtttgagtgtaccaagtaccatggtatacttttgctattgtgttattgcatt |
27163540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 728 - 1116
Target Start/End: Original strand, 27163791 - 27164191
Alignment:
| Q |
728 |
gaaacatgagtgttccaagtattgtggattattcaagaatgttgcttgcagctcaagtaacagcatccttgttcatatccttctcttcattctctaatat |
827 |
Q |
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| T |
27163791 |
gaaacatgagtgttccaagtattgtggattattcaagaatgttgcttgcagctcaagtaacagcatccttgttcatatccttctcttcattctctaatat |
27163890 |
T |
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| Q |
828 |
tttggttgcttgatttgctacatttgggaaacatgagagg-aaagagtgagtgaaatgattctacagtgagtgttccaagtattgtggattattcaagaa |
926 |
Q |
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| T |
27163891 |
tttggttgcttgatttgctacatttgggaaacatgagaggaaaagagtaagtgaaatgattctacagtgagagttccaagtattgtggattattcaagaa |
27163990 |
T |
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| Q |
927 |
tgtgattagatttaaatgaatttaattactta--gactaaccaataagctaaatt-attagatgac-agtagttgtcaaaataaagttacctcaatatat |
1022 |
Q |
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| T |
27163991 |
tgtgattagatttaaatgaatttaattacttaagaactaaccaataagctaaattaattagatgacaagtagttgtc-aaataaagtta-ctcaatatat |
27164088 |
T |
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| Q |
1023 |
tcatagc-agaaaa---tattagatgac-aatgaaatttgtcaaat-tattatactc-atatatccatag-atggagattac-ccactg-agtactatgc |
1112 |
Q |
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||||||| |||||| |||||||||| ||||||||||||||||| || | ||||| |||||||||||| ||||||||||| | |||| |||||||||| |
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| T |
27164089 |
tcatagcaagaaaaattaattagatgacaaatgaaatttgtcaaatataat-tactcaatatatccatagaatggagattacacaactgaagtactatgc |
27164187 |
T |
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| Q |
1113 |
tcaa |
1116 |
Q |
| |
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|||| |
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| T |
27164188 |
tcaa |
27164191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 538 - 609
Target Start/End: Original strand, 27163645 - 27163716
Alignment:
| Q |
538 |
gttgtgaaccctaccttgtctacaatagtcctcttgttgtgtgcttacaatttcagagttttgtcaagccta |
609 |
Q |
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| T |
27163645 |
gttgtcaaccctaccttgtctacaatagtcctcttgttgtgtgcttgcaatttcagagttttgtcaatccta |
27163716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 27163709 - 27163755
Alignment:
| Q |
684 |
caatcctagtgaggagaagtgagggacactatgttactccttgtgaa |
730 |
Q |
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| T |
27163709 |
caatcctagtgaggagaagtgagggacactatgttactccttgtgaa |
27163755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 827 - 864
Target Start/End: Original strand, 27163763 - 27163800
Alignment:
| Q |
827 |
ttttggttgcttgatttgctacatttgggaaacatgag |
864 |
Q |
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| T |
27163763 |
ttttggttgcttggtttgttacatttgggaaacatgag |
27163800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 826
Target Start/End: Original strand, 53996862 - 53996921
Alignment:
| Q |
767 |
tgttgcttgcagctcaagtaacagcatccttgttcatatccttctcttcattctctaata |
826 |
Q |
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| T |
53996862 |
tgttgcttgtggttcaagtaaccgcatccttattcacatccttctctttattctctaata |
53996921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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