View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5094-Insertion-2 (Length: 85)
Name: NF5094-Insertion-2
Description: NF5094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5094-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 66; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-30
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 15658304 - 15658228
Alignment:
| Q |
8 |
tttgtttcattgtagtgagtcctcttttaaacatgttcttatgtgctatctcccctgcactttttctttttcccctcc |
85 |
Q |
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| T |
15658304 |
tttgtttcatcgtagtgagtcctcttttaa-catgttcttatgtgctatctcccctgcactttttctttttcccctcc |
15658228 |
T |
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Target: scaffold0003 (Bit Score: 59; Significance: 1e-25; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 244233 - 244159
Alignment:
| Q |
9 |
ttgtttcattgtagtgagtcctcttttaaacatgttcttatgtgctatctcccctgcactttttctttttcccct |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||| |
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| T |
244233 |
ttgtttcattgtagtgagtcctcttttaaacatgttcttaggtgctatctcgcttacactttttctttttcccct |
244159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 246258 - 246334
Alignment:
| Q |
9 |
ttgtttcattgtagtgagtcctcttttaaacatgttcttatgtgctatctcccctgcactttttctttttcccctcc |
85 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||| | || |||||||||||||||||| |
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| T |
246258 |
ttgtttcattgtagtgagtcctcttgtaaacatgttcttaggtgctatctcccttacaatttttctttttcccctcc |
246334 |
T |
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