View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5094_low_1 (Length: 500)
Name: NF5094_low_1
Description: NF5094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5094_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Original strand, 7235364 - 7235834
Alignment:
| Q |
17 |
acatgcgaatttcgagcttgcttattgtaataactttaatcgaatccctttgattttataacaacatctaagcatgttgtacttgcatttttccagttca |
116 |
Q |
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| T |
7235364 |
acatgcgaatttcgagcttgcttattgtaataactttaatcgaatccctttgattttataacaacatctaagcatgttgtacttgcatttttccagttca |
7235463 |
T |
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| Q |
117 |
atcattacacttgtttctacttaaagtctattactctattcaattttggtatgttttggtttgctcacaataccaatatgttagggatgctatctttcaa |
216 |
Q |
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| T |
7235464 |
atcattacacttgtttctacttaaagtctattactctattcaattttggtatgttttggtttgctcacaataccaatatgttagggatgctatctttcaa |
7235563 |
T |
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| Q |
217 |
tgaatggttgtagggaaagaggnnnnnnncataagaacaagagaaccagttgagccatagaaacgcaacaccagaaaaggctatgtatcctgtctaataa |
316 |
Q |
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| T |
7235564 |
tgaatggttgtagggaaagaggaaaaaaacataagaacaagagaaccagttgagccatagaaacgcaacaccagaaaaggctatgtatcctgtct----a |
7235659 |
T |
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| Q |
317 |
atatgccacaactactatttaaaatcttttgttgaaaattacactatattgttaaaataatatccacaccgccttatatgccacaactactacttgaaa- |
415 |
Q |
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| T |
7235660 |
atatgccacaactactatttaaaatcttttgttgaaaattacactatattgttaaaataatatccacaccgccttatatgccacaactactatttgaaat |
7235759 |
T |
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| Q |
416 |
ttttttgttgaaaatcatactaaactgttaaaattttctgcacttctattgtttctttctgagagatgccctttg |
490 |
Q |
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| T |
7235760 |
ttttttgttgaaaatcatactaaactgttaaaattttctgcacttcgagtgtttctttctgagagatgccctttg |
7235834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 29265053 - 29264968
Alignment:
| Q |
140 |
aagtctattactctattcaattttggtatgttttggtttgctcacaataccaatatgttagggatgctatctttcaatgaatggttg |
226 |
Q |
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||||||| || ||||||||| || |||||||||| |||| ||| | |||||||||| |||||||||| ||||||||||||||||| |
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| T |
29265053 |
aagtctaatagtctattcaaattgtgtatgttttgatttgttcagag-accaatatgtaagggatgctacctttcaatgaatggttg |
29264968 |
T |
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