View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5094_low_3 (Length: 343)
Name: NF5094_low_3
Description: NF5094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5094_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 40804497 - 40804808
Alignment:
| Q |
13 |
aatattaagacaaactatacccctaaagtaaccatagtacaaattggcagatcaaaatttatgtaacatgaagaagtgagacacactaacaaaaagaaag |
112 |
Q |
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| T |
40804497 |
aatattaagacaaactatacccctaaagtaaccttagtacaaattggcagatcaaaatttatgtaacatgaagaagtgagacgcactaacaaaaagaaag |
40804596 |
T |
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| Q |
113 |
aatccaaaaagtatcttaccattatagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtc |
212 |
Q |
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| T |
40804597 |
aatccaaaaagtatcttaccattatagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtc |
40804696 |
T |
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| Q |
213 |
ctttgggaaaatctttccattcttgtaaatcattggcagtacaaaccatagctggtttagcatcctttctcagactctcatcaacatccagttccttctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804697 |
ctttgggaaaatctttccattcttgtaaatcattggcagtacaaaccatagctggtttagcatcctttctcagactctcatcaacatccagttccttctg |
40804796 |
T |
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| Q |
313 |
caaaaccatgac |
324 |
Q |
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|||||||||||| |
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| T |
40804797 |
caaaaccatgac |
40804808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 4640877 - 4640725
Alignment:
| Q |
128 |
ttaccattatagtccatggcctcaagctttactcttatttcagaaacagaagtgttgtctccctcaaggagaagaaccttgagtcctttgggaaaatctt |
227 |
Q |
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||||||||||||||||| | ||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||| | |||||||| || ||||||| |
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| T |
4640877 |
ttaccattatagtccatagattcaagctttgttcttatttcagaagcagaattgttgtctccttcaaggagaagaaccctaagtccttttgggaaatctt |
4640778 |
T |
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| Q |
228 |
tccattcttgtaaatcattggcagtacaaaccatagctggtttagcatccttt |
280 |
Q |
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| T |
4640777 |
tccatccttgtaaatcattggcagtgcaaaccatagctggtttggcatccttt |
4640725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 279
Target Start/End: Original strand, 14803217 - 14803397
Alignment:
| Q |
105 |
aaagaaagaatccaaaaagtatcttaccattatagtccatggcctca-----agctttactcttatttcagaaacagaagtgttgtctccctcaaggaga |
199 |
Q |
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|||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||| ||| ||| ||| | |||||||||| |||| ||||||||| |
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| T |
14803217 |
aaagaaagaaaccaaaaagtctcttaccattacagtccattgcctcgcctcgagcttg-ctcgtatctcaacagcagaagtgttatctctttcaaggaga |
14803315 |
T |
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| Q |
200 |
agaaccttgagtcctttgggaaaatctttccattcttgta--aatcattggcagtacaaaccatagctggtttagcatcctt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||| ||||||||||| |
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| T |
14803316 |
agaaccttgagtcctttgggaaaatctttccattcttataataatcattggcagtataaactatagctggcttagcatcctt |
14803397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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