View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095-Insertion-1 (Length: 508)
Name: NF5095-Insertion-1
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 31179892 - 31179403
Alignment:
| Q |
15 |
agtagtatatcctttgaccttatgtattatttagtttgcttgtgaaattggcaaattacttattatttgatttaaagcacaaaggataagaatgagcatt |
114 |
Q |
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| T |
31179892 |
agtagtatatcctttgaccttatgtattatttagtttgcttgtgaaattggcaaattacttattatttgatttaaagcacaagggataagaatgagcatt |
31179793 |
T |
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| Q |
115 |
ttacatcattagaaagaatcatatccatatatgctatcccattcgtagtgttaccacaactatatatgttttgctttttccacacagcaaggttccaagc |
214 |
Q |
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| T |
31179792 |
ttacatcattagaaagaatcatatccatatatgctatcccattcgtagtgttaccacaactatatatgttttgctttttccacacagcaaggttccaagc |
31179693 |
T |
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| Q |
215 |
aaccgttcccgtttgcatactccaaaaaattgatgttattatttttcatttagagggaactcaattggtatagatttcttggattggacaattcactgtt |
314 |
Q |
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| T |
31179692 |
aaccgttcccgtttgcatactccaaaaaattgatgttattatttttcatttagagggaactcaattggtatagatttcttggattggacaattcacgttt |
31179593 |
T |
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| Q |
315 |
tgcataattataatatgtcacaaagcaaatctatcaccatattggaacggtgcatgtgatgagattaaaattgagtgtgtaggtcaacatctaagggtta |
414 |
Q |
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| T |
31179592 |
tgcataatt---atatgtcacaaagcaaatctatcaccatattgcaacagtgcatgtgataagattaaaattgagtgtgta-gtcaatatctaagggtta |
31179497 |
T |
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| Q |
415 |
aaaaatagaatctatccggatgacttaatcatttgaaattttgaactatatactaactacggttcagttaattaacttttgtactaaaaagtat |
508 |
Q |
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| T |
31179496 |
aaaaatagaatctatccggatgacttaatcatttgaaattttgaactatatactaactacggttcagttaattaacttttatactaaaaagtat |
31179403 |
T |
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