View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095-Insertion-11 (Length: 145)
Name: NF5095-Insertion-11
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095-Insertion-11 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 6938789 - 6938652
Alignment:
| Q |
11 |
actactttcaataaaactatcaacaaatcataactaaattctgatttctttttctcagtttgtgaataagtttatctatctgcataattag------ctg |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6938789 |
actactgtcaataaaactatcaacaaatcataactaaattctgatttctttttctcagtttgtgaataagtttatctatctgcataattagaaggttctg |
6938690 |
T |
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| Q |
105 |
ctgtgctgatcaaaaagccacaacagttcattggcgta |
142 |
Q |
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| T |
6938689 |
ctgtgctgatcaaaaagccacaacagttcattggcgta |
6938652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 6796894 - 6796992
Alignment:
| Q |
11 |
actactttcaataaaactatcaacaaatcataactaaattctg----------atttctttttctcagtttgtgaataagtttatctatctgcataatt |
99 |
Q |
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| T |
6796894 |
actacgtttaataaaactatgaacaaatcataactaaattctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataatt |
6796992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 6527396 - 6527439
Alignment:
| Q |
58 |
ctttttctcagtttgtgaataagtttatctatctgcataattag |
101 |
Q |
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| T |
6527396 |
ctttttctcagtttgtgaataagtttatctttctgcatcattag |
6527439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 6848977 - 6849020
Alignment:
| Q |
58 |
ctttttctcagtttgtgaataagtttatctatctgcataattag |
101 |
Q |
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|
| T |
6848977 |
ctttttctcagtttgtgaataagtttatctttctgcatcattag |
6849020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 6789268 - 6789302
Alignment:
| Q |
102 |
ctgctgtgctgatcaaaaagccacaacagttcatt |
136 |
Q |
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| T |
6789268 |
ctgctgtgctgatcaaaaagccacaacagttcatt |
6789302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 6410959 - 6410991
Alignment:
| Q |
21 |
ataaaactatcaacaaatcataactaaattctg |
53 |
Q |
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| T |
6410959 |
ataaaactatcaacaaatcataactaaattctg |
6410991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 6558662 - 6558695
Alignment:
| Q |
58 |
ctttttctcagtttgtgaataagtttatctatct |
91 |
Q |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
6558662 |
ctttttctcagtttgtgaataggtttatctatct |
6558695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 8451757 - 8451722
Alignment:
| Q |
60 |
ttttctcagtttgtgaataagtttatctatctgcat |
95 |
Q |
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||||||||||||||||||| || ||||||||||||| |
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| T |
8451757 |
ttttctcagtttgtgaataggtctatctatctgcat |
8451722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 12082 - 12125
Alignment:
| Q |
58 |
ctttttctcagtttgtgaataagtttatctatctgcataattag |
101 |
Q |
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| T |
12082 |
ctttttctcagtttgtgaataagtttatctttctgcatcattag |
12125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 7982071 - 7982102
Alignment:
| Q |
58 |
ctttttctcagtttgtgaataagtttatctat |
89 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
7982071 |
ctttttctcagtttgtgaatatgtttatctat |
7982102 |
T |
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