View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095-Insertion-14 (Length: 267)
Name: NF5095-Insertion-14
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095-Insertion-14 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 3042547 - 3042286
Alignment:
| Q |
6 |
cacttgatgtatctgttcccgcagtttcactttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3042547 |
cacttgatgtatctgttcccgcagtttcactttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatc |
3042448 |
T |
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| Q |
106 |
ttgtaaaagaagctcaaaccttcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3042447 |
ttgtaaaagaagctcaaaccttcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtt |
3042348 |
T |
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| Q |
206 |
tcactaggaaacttgaaagtttctcaactagcaccctcgagcacaaagttaccagtatcgtt |
267 |
Q |
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| T |
3042347 |
tccctaggaaacttgaaagtttctcaactagcaccctcgagcacaaagttaccagtatcgtt |
3042286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 3034484 - 3034244
Alignment:
| Q |
27 |
cagtttcactttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaagctcaaacct |
126 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |
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| T |
3034484 |
cagttccactttcatagtagttttcattagcactaccagatggtaaattaatagaatgaataacaagattaccatcattttgtaaaacaagctcaaacct |
3034385 |
T |
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| Q |
127 |
tcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtttcactaggaaacttgaaagtt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
3034384 |
tcctttactgaaatttgactccttaagccttgaagaaaggcttccacctttttgaagaaactgagaaggcaacaaggtgtcactaggatacttgaaagtc |
3034285 |
T |
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| Q |
227 |
tctcaactagcaccctcgagcacaaagttaccagtatcgtt |
267 |
Q |
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| T |
3034284 |
tcccaaccaccaccctcgagcacaaagttaccagtatcgtt |
3034244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 3055346 - 3055106
Alignment:
| Q |
27 |
cagtttcactttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaagctcaaacct |
126 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
3055346 |
cagttccactttcatagtagttttcattagcattaccagatggtaaattaatagaatgcataacaagatcaccattttcttgtaaaagaagctcaaacct |
3055247 |
T |
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| Q |
127 |
tcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtttcactaggaaacttgaaagtt |
226 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
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| T |
3055246 |
tcctttactaaaatttgactgcttaagccttgaagaaagctttccacctttttgaagaaattgagatggcaacaaggtgtcactaggatacttgaaagtc |
3055147 |
T |
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| Q |
227 |
tctcaactagcaccctcgagcacaaagttaccagtatcgtt |
267 |
Q |
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| T |
3055146 |
tcccaaccaccaccctcgagcacaaagttaccagtatcgtt |
3055106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 3040315 - 3040094
Alignment:
| Q |
27 |
cagtttcactttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaagctcaaacct |
126 |
Q |
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|||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||| |
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| T |
3040315 |
cagttttactttcatagtagacttcattagcataatcagatggtaaattaatagaatacataacaagatcaccagtatcttctaaaagaagctcaaacct |
3040216 |
T |
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| Q |
127 |
tcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtttcactaggaaacttgaaagtt |
226 |
Q |
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||||| |||||||||||||||| | |||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
3040215 |
tccttcactgaaatttgactcccttagccttgaagaaagctttccatctttttgaagaacctgagaaggcaacaaggtgtcactaggaaacttgaaagtc |
3040116 |
T |
|
| Q |
227 |
tctcaactagcaccctcgagca |
248 |
Q |
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|| |||| |||||||||||| |
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| T |
3040115 |
tcccaaccgccaccctcgagca |
3040094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 3067953 - 3068164
Alignment:
| Q |
20 |
gttcccgcagtttcactttcatagtagttttc---attagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaa |
116 |
Q |
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|||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||| || ||||||||| | |
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| T |
3067953 |
gttcccacagtttcactttcatagtagttttctacattaacataaccagatggtaaattaatagaatgcataacaagactaccattattttgtaaaagga |
3068052 |
T |
|
| Q |
117 |
gctcaaaccttcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtttcactaggaaa |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||| ||||||||||| |
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| T |
3068053 |
gctcaaaccttcctttactgaaatttgtctccttaagtcttgaagaaaggcttccacctttacgaagaacctgagaaggcaacaaggtgtcactaggaaa |
3068152 |
T |
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| Q |
217 |
cttgaaagtttc |
228 |
Q |
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||||||||||| |
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| T |
3068153 |
gttgaaagtttc |
3068164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 225
Target Start/End: Original strand, 3063952 - 3064143
Alignment:
| Q |
34 |
actttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaagctcaaaccttccttta |
133 |
Q |
| |
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||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
3063952 |
actttcaaagtagttttcattaacataaccagatggtaaattaatagaatgcataacaagattaccatcactttgtaaaatgagttcaaaccttccttta |
3064051 |
T |
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| Q |
134 |
ctgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtttcactaggaaacttgaaagt |
225 |
Q |
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||||||| || ||||||||||||||||||||||||| ||||| | | || |||||||||||| || || |||||||||||||||||||| |
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| T |
3064052 |
ctgaaatctgtctccttaagccttgaagaaagctttcttcctttatccacaacctgagaaggcaataacgtgtcactaggaaacttgaaagt |
3064143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 3071638 - 3071823
Alignment:
| Q |
27 |
cagtttcactttcatagtagttttc---attagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaagctcaaa |
123 |
Q |
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||||| ||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||| ||||| || ||||| ||||||||| |
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| T |
3071638 |
cagttccactttcatagtagttttcttcattagcattaccagatggtaagataatagaatgaataacaagattactatcattttttaaaacaagctcaaa |
3071737 |
T |
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| Q |
124 |
ccttcctttactgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaacaaggtttcac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| || |||||||||||||||||| |||| |
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| T |
3071738 |
ccttcctttactgaaatttgactccttaagccttgaagaaagctttccatcttttagaataacctgagaaggcaacaaggtgtcac |
3071823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 3066245 - 3066410
Alignment:
| Q |
33 |
cactttcatagtagttttcattagcaaaaccagatggtaaattaatagaatgcataacaagattaccatcatcttgtaaaagaagctcaaaccttccttt |
132 |
Q |
| |
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||||||||||| ||||||||||| || ||||| |||||||||||| | ||| ||||||||||||| ||||| ||||| ||| || |||||||||||||| |
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| T |
3066245 |
cactttcatagcagttttcattaacataaccaaatggtaaattaacaaaatttataacaagattacaatcattttgtagaaggagttcaaaccttccttt |
3066344 |
T |
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| Q |
133 |
actgaaatttgactccttaagccttgaagaaagcttttgacctttttgaagaaactgagaaggcaac |
199 |
Q |
| |
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|||||||||| |||| ||||||||||||| | | || |||| ||| ||||| ||||||||||||| |
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| T |
3066345 |
actgaaatttttctccataagccttgaagagaac-ttccacctatttcaagaacctgagaaggcaac |
3066410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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