View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5095-Insertion-2 (Length: 1091)

Name: NF5095-Insertion-2
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5095-Insertion-2
NF5095-Insertion-2
[»] chr1 (4 HSPs)
chr1 (123-908)||(31283512-31284307)
chr1 (8-71)||(31283433-31283496)
chr1 (591-634)||(7941672-7941715)
chr1 (613-666)||(4699599-4699652)
[»] chr5 (6 HSPs)
chr5 (592-666)||(12459964-12460038)
chr5 (681-749)||(37526251-37526318)
chr5 (681-749)||(37588412-37588479)
chr5 (682-749)||(37690690-37690756)
chr5 (370-414)||(7367623-7367668)
chr5 (591-692)||(7674655-7674756)
[»] chr3 (2 HSPs)
chr3 (679-749)||(43116478-43116547)
chr3 (591-634)||(30668930-30668973)
[»] chr8 (3 HSPs)
chr8 (717-749)||(27465324-27465356)
chr8 (613-689)||(38537601-38537677)
chr8 (612-666)||(35220706-35220760)
[»] chr4 (3 HSPs)
chr4 (717-749)||(28232496-28232528)
chr4 (591-634)||(21523623-21523666)
chr4 (682-749)||(45128363-45128429)
[»] chr2 (4 HSPs)
chr2 (678-749)||(28933775-28933845)
chr2 (589-635)||(5902509-5902555)
chr2 (589-635)||(40943977-40944023)
chr2 (586-635)||(44606067-44606116)
[»] chr7 (2 HSPs)
chr7 (676-749)||(15075132-15075205)
chr7 (590-635)||(25670547-25670592)
[»] chr6 (1 HSPs)
chr6 (589-650)||(27595527-27595588)


Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 123 - 908
Target Start/End: Original strand, 31283512 - 31284307
Alignment:
Q  123 gtgttactatgctgttagtttgtaaattcttgattagattcaatgagaagcattcattttgtatacattgagttccagttttctgtttatcactgttata 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31283512 gtgttactatgctgttagtttgtaaattcttgattagattcaatgagaagcattcattttgtatacattgagttccagttttctgtttatcactgttata 31283611  T
Q  223 tcttttgatgtgttttttccttttgctttacaataggtttggtaaacatatataagatttgtttgttagattttgatttagttaaaatgtagatagattt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31283612 tcttttgatgtgttttttccttttgctttacaataggtttggtaaacatatataagatttgtttgttagattttgatttagttaaaatgtagatagattt 31283711  T
Q  323 tggtttgggaggttggataactcgtctagtttgagctaagagaatatgagttggaggtcttgggttcaaacccgacgattgagtaaatatta------ca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||      ||    
T  31283712 tggtttgggaggttggataactcgtctagtttgagctaagagaatataagttggaggtcttgggttcaaacctgacgattgagtaaatattaatctaaca 31283811  T
Q  417 aactaactactaatatttgtcattnnnnnnnnntgatagattttggattagattctttgaggagttagccgtattggttcgtcatttgatgtgactagtt 516  Q
    ||||||||||||||||||||||||         |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31283812 aactaactactaatatttgtcattaaaaaaa--tgatagattttggattggattcttggaggagttagccgtattggttcgtcatttgatgtgactagtt 31283909  T
Q  517 cataaattagttgctgtaatgagtatggatttgtttggattgtgttatttgagnnnnnnnattggtattagtacttgtgagactgtttggaaacatttat 616  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||    
T  31283910 cataaattagtggctgtaatgagtatggacttgtttggattgtgttatttgagtttttttattggtattagtacttttgagactgtttggaaacatttat 31284009  T
Q  617 gaaaacaacttatgacatgcttatatgctatttttggcttatttttataaatttgtcagggtagcttatgaaaacaacttttaacttatgtgaagaatgt 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31284010 gaaaacaacttatgacatgcttatatgctatttttggcttatttttataaatttgtcaaggtagcttatgaaaacaacttttaacttatgtgaagaatgt 31284109  T
Q  717 tttgatttgattttatc--ttttgctatagaaatatacatatatacttaattgacaaacactcatgttcgaagcaagtaactaacttgtttatccaaaca 814  Q
    |||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31284110 tttgatttgattttatctttttttttatagaaatatacatatatacttaattgacaaacacttatgttcgaagcaagtaactaacttgtttatccaaaca 31284209  T
Q  815 tgacccatatttatttcagttttcaacctcattgcctcatccattgttttttaccctttttagtgatcaattta----agtttttaatatcaatttag 908  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    || |||||||||||||||||    
T  31284210 tgacccatatttatttcagttttcaacctcattgcctcatccattgttttttaccctttttagcgatcaatttaagatagattttaatatcaatttag 31284307  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 31283433 - 31283496
Alignment:
Q  8 gataatatagttagttacattctttttgtttttgtttatctctttcaattgcagttttcatata 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31283433 gataatatagttagttacattctttttgtttttgtttatctctttcaattgcagttttcatata 31283496  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 591 - 634
Target Start/End: Complemental strand, 7941715 - 7941672
Alignment:
Q  591 ttgtgagactgtttggaaacatttatgaaaacaacttatgacat 634  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||    
T  7941715 ttgtgagactgtttggaagaatttatgaaaacagcttatgacat 7941672  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 613 - 666
Target Start/End: Original strand, 4699599 - 4699652
Alignment:
Q  613 ttatgaaaacaacttatgacatgcttatatgctatttttggcttatttttataa 666  Q
    ||||||||||||||||||||||| | ||| ||| ||||| |||||||| |||||    
T  4699599 ttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataa 4699652  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 592 - 666
Target Start/End: Original strand, 12459964 - 12460038
Alignment:
Q  592 tgtgagactgtttggaaacatttatgaaaacaacttatgacatgcttatatgctatttttggcttatttttataa 666  Q
    ||||||||||||||| |  |  |||||||||||||||||||||| | ||||| | ||||||||||||||| ||||    
T  12459964 tgtgagactgtttgggagaacctatgaaaacaacttatgacatgttcatatgttgtttttggcttattttcataa 12460038  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 681 - 749
Target Start/End: Original strand, 37526251 - 37526318
Alignment:
Q  681 cttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    |||||||||||||||| || ||||| |||| | | ||||||||||||||||||||||  ||||||||||    
T  37526251 cttatgaaaacaacttatagcttatatgaaaact-ttttgatttgattttatcttttattatagaaata 37526318  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 681 - 749
Target Start/End: Original strand, 37588412 - 37588479
Alignment:
Q  681 cttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    |||||||||||||||| || ||||| |||| | | ||||||||||||||||||||||  ||||||||||    
T  37588412 cttatgaaaacaacttatagcttatatgaaaact-ttttgatttgattttatcttttattatagaaata 37588479  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 682 - 749
Target Start/End: Original strand, 37690690 - 37690756
Alignment:
Q  682 ttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    ||||||||||||||| || ||||| |||| | | ||||||||||||||||||||||  ||||||||||    
T  37690690 ttatgaaaacaacttatagcttatatgaaaact-ttttgatttgattttatcttttattatagaaata 37690756  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 7367623 - 7367668
Alignment:
Q  370 gagttggaggtcttgggttcaaac-ccgacgattgagtaaatatta 414  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||    
T  7367623 gagttggaggtcttgggttcaaacaccgacgaaggagtaaatatta 7367668  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 591 - 692
Target Start/End: Complemental strand, 7674756 - 7674655
Alignment:
Q  591 ttgtgagactgtttggaaacatttatgaaaacaacttatgacatgcttatatgctatttttggcttatttttataaatttgtcagggtagcttatgaaaa 690  Q
    ||||||||||| ||||||  | ||||| ||||||||||||||||| ||||| | | ||||  ||||||||| | |||||   || | |||||||||||||    
T  7674756 ttgtgagactgcttggaagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaa 7674657  T
Q  691 ca 692  Q
    ||    
T  7674656 ca 7674655  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 679 - 749
Target Start/End: Original strand, 43116478 - 43116547
Alignment:
Q  679 agcttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    ||||||||||||| |||| || ||||| |||| | ||||| ||||||||||||||||||| ||||||||||    
T  43116478 agcttatgaaaacgacttatagcttatatgaaaattgttt-gatttgattttatcttttgttatagaaata 43116547  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 591 - 634
Target Start/End: Original strand, 30668930 - 30668973
Alignment:
Q  591 ttgtgagactgtttggaaacatttatgaaaacaacttatgacat 634  Q
    |||||| | |||||||||| ||||||||||||||||||||||||    
T  30668930 ttgtgaaattgtttggaaaaatttatgaaaacaacttatgacat 30668973  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 717 - 749
Target Start/End: Complemental strand, 27465356 - 27465324
Alignment:
Q  717 tttgatttgattttatcttttgctatagaaata 749  Q
    |||||||||||||||||||||||||||||||||    
T  27465356 tttgatttgattttatcttttgctatagaaata 27465324  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 613 - 689
Target Start/End: Complemental strand, 38537677 - 38537601
Alignment:
Q  613 ttatgaaaacaacttatgacatgcttatatgctatttttggcttatttttataaatttgtcagggtagcttatgaaa 689  Q
    |||||||||||||||| |||||||| ||| |||||||| |||||||||  || | ||| ||||| ||| ||||||||    
T  38537677 ttatgaaaacaacttacgacatgctcataagctattttcggcttatttccatgagtttttcaggatagtttatgaaa 38537601  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 612 - 666
Target Start/End: Original strand, 35220706 - 35220760
Alignment:
Q  612 tttatgaaaacaacttatgacatgcttatatgctatttttggcttatttttataa 666  Q
    ||||||||||||  |||||||||||  ||| ||||||||| ||||||||||||||    
T  35220706 tttatgaaaacagtttatgacatgcccataagctatttttagcttatttttataa 35220760  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 717 - 749
Target Start/End: Complemental strand, 28232528 - 28232496
Alignment:
Q  717 tttgatttgattttatcttttgctatagaaata 749  Q
    |||||||||||||||||||||||||||||||||    
T  28232528 tttgatttgattttatcttttgctatagaaata 28232496  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 591 - 634
Target Start/End: Complemental strand, 21523666 - 21523623
Alignment:
Q  591 ttgtgagactgtttggaaacatttatgaaaacaacttatgacat 634  Q
    |||||| |||||||||||  ||||||||||||||||||||||||    
T  21523666 ttgtgacactgtttggaagaatttatgaaaacaacttatgacat 21523623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 682 - 749
Target Start/End: Original strand, 45128363 - 45128429
Alignment:
Q  682 ttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    |||||||||||| || || ||||| ||| ||||  |||||||||||||||||||||| ||||||||||    
T  45128363 ttatgaaaacaatttatagcttatatga-gaataatttgatttgattttatcttttgttatagaaata 45128429  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 678 - 749
Target Start/End: Complemental strand, 28933845 - 28933775
Alignment:
Q  678 tagcttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    |||||||||||||||| || |||||||  |||| |||  |||||||||||||||||||||| |||| |||||    
T  28933845 tagcttatgaaaacaatttataacttaaatgaa-aataatttgatttgattttatcttttgttatataaata 28933775  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 635
Target Start/End: Original strand, 5902509 - 5902555
Alignment:
Q  589 acttgtgagactgtttggaaacatttatgaaaacaacttatgacatg 635  Q
    ||||||||||||||||||||  | ||||||||||| |||||||||||    
T  5902509 acttgtgagactgtttggaagaacttatgaaaacagcttatgacatg 5902555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 635
Target Start/End: Complemental strand, 40944023 - 40943977
Alignment:
Q  589 acttgtgagactgtttggaaacatttatgaaaacaacttatgacatg 635  Q
    |||||||| ||||||||||||  |||||||||||| |||||||||||    
T  40944023 acttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 40943977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 44606067 - 44606116
Alignment:
Q  586 agtacttgtgagactgtttggaaacatttatgaaaacaacttatgacatg 635  Q
    |||||||||  ||||||||||||  | |||||||||||||||||||||||    
T  44606067 agtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatg 44606116  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 676 - 749
Target Start/End: Original strand, 15075132 - 15075205
Alignment:
Q  676 ggtagcttatgaaaacaacttttaacttatgtgaagaatgttttgatttgattttatcttttgctatagaaata 749  Q
    ||||| ||||||||| ||||| |||||||| | || |  |||||||||  ||||||||||||| ||||||||||    
T  15075132 ggtagtttatgaaaataacttataacttatataaaaatagttttgattaaattttatcttttgttatagaaata 15075205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 635
Target Start/End: Original strand, 25670547 - 25670592
Alignment:
Q  590 cttgtgagactgtttggaaacatttatgaaaacaacttatgacatg 635  Q
    ||||||||||||||||  || | |||||||||||||||||||||||    
T  25670547 cttgtgagactgtttgagaaaacttatgaaaacaacttatgacatg 25670592  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 589 - 650
Target Start/End: Original strand, 27595527 - 27595588
Alignment:
Q  589 acttgtgagactgtttggaaacatttatgaaaacaacttatgacatgcttatatgctatttt 650  Q
    |||| ||||||||||||| |  ||||||| ||||||||||||||||| | ||| ||||||||    
T  27595527 acttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataagctatttt 27595588  T

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