View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095-Insertion-5 (Length: 887)
Name: NF5095-Insertion-5
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095-Insertion-5 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 595 - 887
Target Start/End: Complemental strand, 7357841 - 7357549
Alignment:
| Q |
595 |
ttggggtccacttccactgtatttcaagaacaatttccaatataaataagagctcacactcttcatgtgccaaagagagttgaatttgcattagtgttat |
694 |
Q |
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| T |
7357841 |
ttggggtccacttccactgtatttcaagaacaatttccaatataaataagagctcacacccttcatgtgccaaagagagttgaatttgcattagtgttat |
7357742 |
T |
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| Q |
695 |
ttcattcgattttgaaacaatagtcacaaataggattcaggttttgcaacattaatctttcactataatatataatgtttttgcacaactcttattcttc |
794 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7357741 |
ttcattcgattttgaaacaatagtcacaaataggattcaggttttgcaacattaatctttcactataatatataatgtttttgcacaactcttattcttc |
7357642 |
T |
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| Q |
795 |
ttatcaaccatcatttcatcactataactctcttcctccttttcttcttttttggaagtctataacacaagatagtggacaaccattagcata |
887 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7357641 |
ttatcaaccatcatttcatcactataattctcttcctccttttcttcttttttggaagtctataacacaagatagtggacaaccattaccata |
7357549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 188 - 468
Target Start/End: Complemental strand, 7358187 - 7357907
Alignment:
| Q |
188 |
ggttccttatcttgtgccttaaaggtataagttaagatttccctaagttaaatgtatgtagttaagtgaaagtaaagcttataattttgtgagtttgaga |
287 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
7358187 |
ggttccttatcttgtgctttaagggtataagttaagattttcctaatttaaatgtatgtagctaagtgaaagggaagcttataattttgtgagtttgaga |
7358088 |
T |
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| Q |
288 |
tctttctcttccacttcaaaatatccttcacaagggaaataaccctaaccttaaataagaaggtctcaaacatagtatatcttctcaaatatatttaatt |
387 |
Q |
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| T |
7358087 |
tctttctcttccacttcaaaatatccttcacaagggaaataaccctaaccttaaataagaaggtctcaaacatagtataccttctcaaatatatttaatt |
7357988 |
T |
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| Q |
388 |
tgcaggccaaatctttaagatttatttttcttcagactttaattaatggactttagatcatttgtctcaacgtttggactt |
468 |
Q |
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| T |
7357987 |
tgttggccaaatctttaagatttatttttcttcagactttaattaatggactttaggtcatttgtctcaacgtttggactt |
7357907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 7358365 - 7358265
Alignment:
| Q |
8 |
gttattaactgaaaggcaaattcacctttcctgttttccaagttcataaatggttttgccattaattaagttaagggtcatgttaagtagaaatatccct |
107 |
Q |
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| T |
7358365 |
gttattaactgaaaggcaaattcacctttcccgttttccaagttcacaaatgattttgccattaattaagttaagggtcatgttaagtagaaatattcct |
7358266 |
T |
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| Q |
108 |
t |
108 |
Q |
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| T |
7358265 |
t |
7358265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 7359392 - 7359334
Alignment:
| Q |
358 |
catagtatatcttctcaaatatatttaatttgcaggccaaatctttaagatttattttt |
416 |
Q |
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| T |
7359392 |
catagtataccttctcaaatatatttaatttgtagggcaaatcttcaagatttattttt |
7359334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 623 - 701
Target Start/End: Complemental strand, 7377151 - 7377073
Alignment:
| Q |
623 |
aacaatttccaatataaataagagctcacactcttcatgtgccaaagagagttgaatttgcattagtgttatttcattc |
701 |
Q |
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| T |
7377151 |
aacaatttccaatataaagaagagctcagaccctccatgttgcaaagagagttgaacttgtgttagttttatttcattc |
7377073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 606
Target Start/End: Original strand, 17124878 - 17124929
Alignment:
| Q |
555 |
taatgtatttcaagaacaaaacacacaacaatgtttgactttggggtccact |
606 |
Q |
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| T |
17124878 |
taatgtattccaagaacaaaacaaacaacaatgtttcacttcagggtccact |
17124929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 496 - 608
Target Start/End: Complemental strand, 25064920 - 25064808
Alignment:
| Q |
496 |
gaatgcaaccttaatttccttgatgatgatctgggaggatttcttccacaagacatgtctaatgtatttcaagaacaaaacacacaacaatgtttgactt |
595 |
Q |
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||||||||||| ||||||||||||| |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
25064920 |
gaatgcaacctgaatttccttgatgctgatgtgggagggtttctttcacaagacatatctaatgtatttcaagaacaaaacaaacaacaatgtttgtctt |
25064821 |
T |
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| Q |
596 |
tggggtccacttc |
608 |
Q |
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| T |
25064820 |
tggggtccacttc |
25064808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 496 - 608
Target Start/End: Original strand, 25239006 - 25239118
Alignment:
| Q |
496 |
gaatgcaaccttaatttccttgatgatgatctgggaggatttcttccacaagacatgtctaatgtatttcaagaacaaaacacacaacaatgtttgactt |
595 |
Q |
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| T |
25239006 |
gaatgcaacctgaatttccttgatgctgatgtgggagggtttctttcacaagacatatctaatgtatttcaagaacaaaacaaacaacaatgtttgtctt |
25239105 |
T |
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| Q |
596 |
tggggtccacttc |
608 |
Q |
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| T |
25239106 |
tggggtccacttc |
25239118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 496 - 607
Target Start/End: Complemental strand, 25113646 - 25113535
Alignment:
| Q |
496 |
gaatgcaaccttaatttccttgatgatgatctgggaggatttcttccacaagacatgtctaatgtatttcaagaacaaaacacacaacaatgtttgactt |
595 |
Q |
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||||||||||||||||||||||||| |||| ||||||| |||||| || | ||||| ||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
25113646 |
gaatgcaaccttaatttccttgatgctgatgtgggagggtttctttcaaatgacatatctaatgtatttcaagaacaaaacaaacaacaatgtttatctt |
25113547 |
T |
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| Q |
596 |
tggggtccactt |
607 |
Q |
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|||||||||||| |
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| T |
25113546 |
tggggtccactt |
25113535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 25065180 - 25065108
Alignment:
| Q |
273 |
tttgtgagtttgagatctttctcttccacttcaaaatatccttcacaagggaaataaccctaaccttaaataa |
345 |
Q |
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| T |
25065180 |
tttgtgagtttgagatctttctcttccacttcagaatatccgtcacaagggaaataagcctaaccttaaataa |
25065108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 25238812 - 25238901
Alignment:
| Q |
257 |
aagtaaagcttataattttgtgagtttgagatctttctcttccacttcaaaatatccttcacaagggaaataaccctaaccttaaataagaa |
348 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||||||| | ||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
25238812 |
aagtgaagcttataatt--gtgagtttgagatctttatcttccactttagaatatccgtcacaagggaaataagcctaaccttaaataagaa |
25238901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 25113832 - 25113757
Alignment:
| Q |
273 |
tttgtgagtttgagatctttctcttccacttcaaaatatccttcacaagggaaataaccctaaccttaaataagaa |
348 |
Q |
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|||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
25113832 |
tttgtgagtttgagatctttatcttccactttagaatatccgtcacaagggaaataagcctaaccttaaataagaa |
25113757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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