View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095-Insertion-8 (Length: 567)
Name: NF5095-Insertion-8
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095-Insertion-8 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 342 - 567
Target Start/End: Original strand, 34029531 - 34029756
Alignment:
| Q |
342 |
catcataaattagcatcaattcaaagtccacaatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttcct |
441 |
Q |
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| T |
34029531 |
catcataaattagcatcaattcaaagtccacaatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttcct |
34029630 |
T |
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| Q |
442 |
tggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaat |
541 |
Q |
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| T |
34029631 |
tggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaag |
34029730 |
T |
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| Q |
542 |
tgacctaaaagcatagttccacctgc |
567 |
Q |
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| T |
34029731 |
tgacctaaaagcatagttccacctgc |
34029756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 34027153 - 34027422
Alignment:
| Q |
8 |
ggcaccttaactctaaaatgagt-----tggtccctaattaacgttgtgtgaatgcaattaggactgataaggaaacaaatcagaagggaaaataccaat |
102 |
Q |
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| T |
34027153 |
ggcaccttaactctaaaatgagtaattttggtccctaattaacgttgtgttaatgcaattaggactgataaggaaacaaatcagaagggaaaataccaat |
34027252 |
T |
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| Q |
103 |
agactcaattggaagttagcaattaaggnnnnnnnggagtagttacagaattttgatcaaaataatta-tttcctttcacaacaaatatacgtttgttta |
201 |
Q |
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| T |
34027253 |
agactcaactggaagttagcaattaaggaaaaaaaggagtagttacagaattttgatcaaaataattactttcctttcacaacaaatatacgtttattta |
34027352 |
T |
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| Q |
202 |
taccagtctcattaaaaccgttagatatatctaacaaattagagagaaaaccattaacaatgaaggaacc |
271 |
Q |
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| T |
34027353 |
taccagtctcattaaaaccgttagatatatctaacaaattagagagaaaaccattaacaatgaaggaacc |
34027422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 346 - 567
Target Start/End: Original strand, 34031470 - 34031691
Alignment:
| Q |
346 |
ataaattagcatcaattcaaagtccacaatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttccttggt |
445 |
Q |
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| T |
34031470 |
ataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactaggaccccagcaattcaagtcaatgactttcctcatagattcttccttgct |
34031569 |
T |
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| Q |
446 |
tcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaattgac |
545 |
Q |
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| T |
34031570 |
tctcttcaccttattcgaaacagcagcagatgaagcagaggacaatttcttggcttgagagtatgatctaatattgttcttagcatgttgatgaagtgat |
34031669 |
T |
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| Q |
546 |
ctaaaagcatagttccacctgc |
567 |
Q |
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| T |
34031670 |
ctaaaagcatagttccacctgc |
34031691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 364 - 567
Target Start/End: Original strand, 34026625 - 34026828
Alignment:
| Q |
364 |
aaagtccacaatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttgga |
463 |
Q |
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| T |
34026625 |
aaagtgcacaatattaaaaccttgaagtactaggaccccgacaattcaagtcaatgactttcctcatagattcttccttgcttctcttcaccttgttgga |
34026724 |
T |
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| Q |
464 |
aacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaattgacctaaaagcatagttccac |
563 |
Q |
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| T |
34026725 |
aacagcagcagaagaagcagatgacaatttcttggccttagtgtatgatctgatattgctcttagcatgctgatgaaaggatctaaaagaatggttccac |
34026824 |
T |
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| Q |
564 |
ctgc |
567 |
Q |
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| T |
34026825 |
ctgc |
34026828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 34034675 - 34034743
Alignment:
| Q |
396 |
ggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttggaa |
464 |
Q |
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| T |
34034675 |
ggaccccaacaattcaggtccatgactttcttcatagattcttccttgtttctcttccccttgttggaa |
34034743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 38019427 - 38019382
Alignment:
| Q |
394 |
taggaccccaacaattcaagtccatgactttcttcatagattcttc |
439 |
Q |
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| T |
38019427 |
taggaccccaacaactcaagtacatgactttcctcaaagattcttc |
38019382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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