View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5095-Insertion-9 (Length: 333)

Name: NF5095-Insertion-9
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5095-Insertion-9
NF5095-Insertion-9
[»] chr4 (1 HSPs)
chr4 (8-333)||(39901161-39901486)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 39901486 - 39901161
Alignment:
Q  8 ttaacatcattcgatttagtcctaagctcttaattatcgtctaaactaataaaccaaaatgatatcaactgatgcataacatatctaataaattagtcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39901486 ttaacatcattcgatttagtcctaagctcttaattatcgtctaaactaataaaccaaaatgatatcaactggtgcataacatatctaataaattagtcat 39901387  T
Q  108 acttacaaagcaaaattgatcatcaattaattggtgcgtaacatatcacaataaattaattagccatgctttttctcatgcatccaagtttcaatatata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39901386 acttacaaagcaaaattgatcatcaattaattggtgcgtaacatatcacaataaattaattagccatgctttttctcatgcatccaagtttcaatatata 39901287  T
Q  208 tttttaatcaaacttcaatatctcagctaacttttgttaattattcttaatatttttggtgggactacacattacaatattaggtatatcttttctcttc 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39901286 tttttaattaaacttcaatatctcagctaacttttgttaattattcttaatatttttggtgggactacacattacaatattaggtatatcttttctcttc 39901187  T
Q  308 tccaagtttctcatcacttagtggct 333  Q
    ||||||||||||||||||||||||||    
T  39901186 tccaagtttctcatcacttagtggct 39901161  T

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