View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5095_high_1_N (Length: 372)
Name: NF5095_high_1_N
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095_high_1_N |
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| [»] chr8 (11 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 3042876 - 3042541
Alignment:
| Q |
37 |
cagtcagtgactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagta |
136 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3042876 |
cagtgagtaactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagta |
3042777 |
T |
|
| Q |
137 |
taagtacatatattatcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3042776 |
taagtacatatattatcaggcttagaccacacagtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaat |
3042677 |
T |
|
| Q |
237 |
taagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3042676 |
taagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccc |
3042577 |
T |
|
| Q |
337 |
tgatctgtcaaagaccagtcgaattccggcacttga |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
3042576 |
tgatctgtcaaagaccagtcgaattccggcacttga |
3042541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 49 - 372
Target Start/End: Complemental strand, 3034822 - 3034499
Alignment:
| Q |
49 |
ttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatata |
148 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
3034822 |
ttttggacactgacatttcggtctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatata |
3034723 |
T |
|
| Q |
149 |
ttatcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctc |
248 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034722 |
ttatcaggcttagaccacactgtggtccaaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctc |
3034623 |
T |
|
| Q |
249 |
taagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccctgatctgtcaaa |
348 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |
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|
| T |
3034622 |
taagataataaagagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtaccctgatctgtcaaa |
3034523 |
T |
|
| Q |
349 |
gaccagtcgaattccggcacttga |
372 |
Q |
| |
|
||||| | || |||| |||||||| |
|
|
| T |
3034522 |
gaccaattgagttccagcacttga |
3034499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 49 - 372
Target Start/End: Original strand, 3063607 - 3063930
Alignment:
| Q |
49 |
ttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatata |
148 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3063607 |
ttttggacactgacattttggtctcttatcatctcccaaagtgcagaagctattatatccacaaacaccactacctgcactaacagtataagtacatata |
3063706 |
T |
|
| Q |
149 |
ttatcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctc |
248 |
Q |
| |
|
||| ||||||||||| || ||||||| |||||||| | | ||||| |||| ||||||||||||| || |||||| |||||||||||||||||||||| |
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|
| T |
3063707 |
ttaaagggcttagaccatactgtggtccaaccttcactcttagttgaactcttaggatgcttgtaaagtgtgaacactccatcaaaattaagagttgctc |
3063806 |
T |
|
| Q |
249 |
taagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccctgatctgtcaaa |
348 |
Q |
| |
|
|||||||| | | ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||| ||| ||||||| || ||||||| ||||||| |
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|
| T |
3063807 |
taagataaaattgtgtggtcgagacgttactctcttcttcgaacacattgtatttctcattgttctctcccaaaacatacaagtaccctgatttgtcaaa |
3063906 |
T |
|
| Q |
349 |
gaccagtcgaattccggcacttga |
372 |
Q |
| |
|
||||||| || ||| |||||||| |
|
|
| T |
3063907 |
gaccagttgagctccagcacttga |
3063930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 49 - 372
Target Start/End: Complemental strand, 3055684 - 3055361
Alignment:
| Q |
49 |
ttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatata |
148 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||| |||||||| |
|
|
| T |
3055684 |
ttttggacactgacatgttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatata |
3055585 |
T |
|
| Q |
149 |
ttatcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctc |
248 |
Q |
| |
|
|||||||| ||||||||||| |||||| | | |||| ||| |||||||||| |||| |||||||| || |||||| |||||||||||||||||||| | |
|
|
| T |
3055584 |
ttatcaggtttagaccacactatggtccaaacatcactctcagttgaattcttgggatacttgtaaagtgtgaacactccatcaaaattaagagttgccc |
3055485 |
T |
|
| Q |
249 |
taagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccctgatctgtcaaa |
348 |
Q |
| |
|
||| |||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |
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|
| T |
3055484 |
taacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtaccctgatctgtcaaa |
3055385 |
T |
|
| Q |
349 |
gaccagtcgaattccggcacttga |
372 |
Q |
| |
|
||||| | || |||| |||||||| |
|
|
| T |
3055384 |
gaccaattgagttccagcacttga |
3055361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 37 - 353
Target Start/End: Original strand, 3067631 - 3067947
Alignment:
| Q |
37 |
cagtcagtgactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagta |
136 |
Q |
| |
|
|||| ||| ||||||| ||||| ||| |||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| | | | |
|
|
| T |
3067631 |
cagtgagtaactttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaa |
3067730 |
T |
|
| Q |
137 |
taagtacatatattatcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaat |
236 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||| | |||| |||| ||| |||| ||||| |||| |||||||| || || |||||| |||||||||| |
|
|
| T |
3067731 |
taatgacatatattttcaggctgagaccacactatagtccaacctccactatcagttgaactctttggatgcttaagaagtgtgaacactccatcaaaat |
3067830 |
T |
|
| Q |
237 |
taagagttgctctaagataataaagcgtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccc |
336 |
Q |
| |
|
|||||||||||||||||||| || || || ||||||||| || ||||| |||||||| ||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
3067831 |
taagagttgctctaagataaaaattagtagtggagactttaaccttttcttttgacacatagtatttctcattgttctctctcaagagatacaagtcccc |
3067930 |
T |
|
| Q |
337 |
tgatctgtcaaagacca |
353 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
3067931 |
tgatccgtcaaagacca |
3067947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 3071282 - 3071489
Alignment:
| Q |
49 |
ttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatata |
148 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||| |||| ||||||| |
|
|
| T |
3071282 |
ttttggacaccgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatata |
3071381 |
T |
|
| Q |
149 |
ttatcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctc |
248 |
Q |
| |
|
|| | ||| | ||||||||| || |||| | | ||| |||| |||| ||||| ||||||||| || || ||||| |||||||||||||||||||||| |
|
|
| T |
3071382 |
tttttaggatgagaccacactgtagtccaatttccactatcagttgagttctttggatgcttgaaaggtgaaaacactccatcaaaattaagagttgctc |
3071481 |
T |
|
| Q |
249 |
taagataa |
256 |
Q |
| |
|
|||||||| |
|
|
| T |
3071482 |
taagataa |
3071489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 285
Target Start/End: Complemental strand, 3040672 - 3040439
Alignment:
| Q |
52 |
tggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatatta |
151 |
Q |
| |
|
||||||| || ||| ||||| | ||||| ||||||||||||| | |||||||||||||||||||||||||||| || | ||| |||| ||||||||| |
|
|
| T |
3040672 |
tggacaccgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatattt |
3040573 |
T |
|
| Q |
152 |
tcaggcttagaccacacagtggtccgaccttcaccatcaattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaa |
251 |
Q |
| |
|
||| | ||||||||| || |||| | | || |||| |||||||||||||||||||| ||| || ||||| ||||||||||||| |||||||||| |
|
|
| T |
3040572 |
cgaggatgagaccacactgtagtccaatttccaatatcagttgaattcttcggatgcttgaaaagtgaaaacactccatcaaaattaattgttgctctaa |
3040473 |
T |
|
| Q |
252 |
gataataaagcgtggtagagactttactctcttc |
285 |
Q |
| |
|
||||| || || || ||||||||||||||||| |
|
|
| T |
3040472 |
gataaaaatcagttgtggagactttactctcttc |
3040439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 323
Target Start/End: Original strand, 3065767 - 3065997
Alignment:
| Q |
90 |
tgcagaagctattatatccacaaacaccactacctgcactgacagtataagtacatatattatcaggcttagaccacacagtggtccgaccttcaccatc |
189 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||| ||| |||| |||| || ||||||| ||||| ||||| || ||| |||||||| || |
|
|
| T |
3065767 |
tgcagaagctgttatatccataaacaccactacctaaactaacaatatat-tacacat--tatcaggtttagatcacactatgatccaaccttcactctc |
3065863 |
T |
|
| Q |
190 |
aattgaattcttcggatgcttgtaaactgcgaacacaccatcaaaattaagagttgctctaagataataaagcgtggtagagactttactctcttcttct |
289 |
Q |
| |
|
| | ||| |||| ||||||||||||| || ||||| || ||||||||||||||||||||||| ||| || | ||| | || ||||||||||||| |||| |
|
|
| T |
3065864 |
agtcgaactctttggatgcttgtaaagtgtaaacaccccgtcaaaattaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttct |
3065963 |
T |
|
| Q |
290 |
gacacattgtatttcgtattgttctctctcaaga |
323 |
Q |
| |
|
|||||||||||||| | |||||||||| |||| |
|
|
| T |
3065964 |
tacacattgtatttctcactgttctctctgaaga |
3065997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 25125398 - 25125466
Alignment:
| Q |
37 |
cagtcagtgactttttggacactgacatgttggtcacttatcaactcccaaagtgcagaagctattata |
105 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25125398 |
cagtgagtaactttttggacactgacatgttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 3040395 - 3040330
Alignment:
| Q |
307 |
attgttctctctcaagacatacaggtcccctgatctgtcaaagaccagtcgaattccggcacttga |
372 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||||||||||| || || | |||||||| |
|
|
| T |
3040395 |
attgttctctctcaagagatacaagtctcctgatctgtcaaagaccagtagagttgcagcacttga |
3040330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 3071560 - 3071604
Alignment:
| Q |
309 |
tgttctctctcaagacatacaggtcccctgatctgtcaaagacca |
353 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||| |||||||||||| |
|
|
| T |
3071560 |
tgttctctctcaagagatacaagtctcctgatttgtcaaagacca |
3071604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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