View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5095_high_2 (Length: 338)
Name: NF5095_high_2
Description: NF5095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5095_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 338
Target Start/End: Original strand, 20995763 - 20996096
Alignment:
| Q |
3 |
gaagataagtcccttaaatagcgacaaggagcaacatgacattctaaattaaattacttgtgggaggataattccatggttttcctaatttaggttatgt |
102 |
Q |
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| T |
20995763 |
gaagataagtcccttaaatagcgacaaggagcaacatg---ttctaaattaaattacttgtgggaggataattccatggttttcctaatttaggttatgt |
20995859 |
T |
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| Q |
103 |
ttagtataaagcaatctgacat---ctggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggtaataattagtacatac |
199 |
Q |
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| T |
20995860 |
ttagtataaagcaatctgacatgatctggagcgacgagaatctttatcccacgaggttagtcatcgtttatatagtccttaggtaataattagtacatac |
20995959 |
T |
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| Q |
200 |
cttgcatgaatccaacaaaaagaaagagatattgtaattctgcaatcaacacaataatatgagatttcagttttttgttgttgccataaatggagcattt |
299 |
Q |
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| T |
20995960 |
cttgcatgaatccaccaaaaagaaagaggtttcataattctgcaatcaacacaataatatgagatttcag--ttttgttgttgccataaatggagcattt |
20996057 |
T |
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| Q |
300 |
catgagagcaagaaatgaaataatattttccaagaatag |
338 |
Q |
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| T |
20996058 |
catgagagcaagaaatgaaataatattttccaagaatag |
20996096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 5750070 - 5749934
Alignment:
| Q |
54 |
aattacttgtgggaggataattccatggttttcctaatttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatga |
153 |
Q |
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| T |
5750070 |
aattacatgtgggaggataagtccatagtttttatagcttaggttatatttggtatagatcaatctaacatctagagggacgagaatcttcgtcacatga |
5749971 |
T |
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| Q |
154 |
agttagtcatcgtttatatagtccttaggtaataatt |
190 |
Q |
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| T |
5749970 |
ggttaaccattgtttatatagtcctaaggtcataatt |
5749934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 40117744 - 40117666
Alignment:
| Q |
7 |
ataagtcccttaaatagcgacaaggagcaacatgacattctaaattaaattacttgtgggaggataattccatggtttt |
85 |
Q |
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| T |
40117744 |
ataagtcccttaaatagacatgaagagcaacatgacattctagagtcaattacctatgggaggataagtccatggtttt |
40117666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 5719261 - 5719352
Alignment:
| Q |
92 |
ttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggt |
183 |
Q |
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| T |
5719261 |
ttaggttatatctagtatagagcaatatgacatcggtaaggatgagaatcttcatcccacgatgttattgatcgtttataaagtccttaggt |
5719352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 5614674 - 5614738
Alignment:
| Q |
126 |
tggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggtaataatt |
190 |
Q |
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| T |
5614674 |
tggagggatgagaatcttcgtcccacgaggttatcaatcgtttacatagtccttaggtcataatt |
5614738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 18680108 - 18679972
Alignment:
| Q |
54 |
aattacttgtgggaggataattccatggttttcctaatttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatga |
153 |
Q |
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| T |
18680108 |
aattacatgtgggaggataagtccatagtttttatagcttaggttatatttggtatagatcaatctaacatctagagggacgagaatcttcgtcacatga |
18680009 |
T |
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| Q |
154 |
agttagtcatcgtttatatagtccttaggtaataatt |
190 |
Q |
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| T |
18680008 |
ggttaaccattgtttatatagtcctaaggtcataatt |
18679972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 7142728 - 7142630
Alignment:
| Q |
92 |
ttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggtaataatt |
190 |
Q |
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| T |
7142728 |
ttaggttatatatggtatgaagcaatatgacatctctaggtacgagaatcttcgtcccacgaggttaaccatcgtttatatagtccttaggtcataatt |
7142630 |
T |
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